View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_2 (Length: 472)
Name: NF17784_low_2
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 48043227 - 48043601
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt |
108 |
Q |
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| T |
48043227 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt |
48043326 |
T |
|
| Q |
109 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48043327 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag |
48043426 |
T |
|
| Q |
209 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgtgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48043427 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
48043526 |
T |
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| Q |
309 |
catgatgtaacaaacttcactcccattgattgatctcaggcccctgctcaagtgaaacaacaacatatgaatgga |
383 |
Q |
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| T |
48043527 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatgga |
48043601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 151 - 397
Target Start/End: Original strand, 48056587 - 48056832
Alignment:
| Q |
151 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
250 |
Q |
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| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
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| Q |
251 |
aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgtgaacatgatgtaacaaacttcactcccattgattgatctcaggcc |
350 |
Q |
| |
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||||||||||||||| |||||| |||||||| |||||| |||||||||||| || || ||||||| |||||||||| ||| |||| |||||| |||| | |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtct |
48056786 |
T |
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| Q |
351 |
cctgctcaagtgaaacaacaacatatgaatggaaagtacgagcacat |
397 |
Q |
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| T |
48056787 |
ccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacat |
48056832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 48051312 - 48051480
Alignment:
| Q |
152 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
251 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
|
| Q |
252 |
atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgtgaacatgatgtaacaaacttcactccc |
332 |
Q |
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| T |
48051412 |
atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 48037329 - 48037500
Alignment:
| Q |
160 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
258 |
Q |
| |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
|
| Q |
259 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgtgaacatgatgtaacaaacttc |
326 |
Q |
| |
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||||| | || ||| |||||||| ||||||| || |||||||||||| || ||||| | |||||||||| |
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| T |
48037429 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttc |
48037500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
90 |
Q |
| |
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| T |
48051132 |
gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 304
Target Start/End: Original strand, 48045200 - 48045328
Alignment:
| Q |
173 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca |
269 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || |
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| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg |
48045293 |
T |
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| Q |
270 |
aattactgagtcaatgttgttggagtttttacatg |
304 |
Q |
| |
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|| |||||| |||||||| || |||||||||||| |
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| T |
48045294 |
cataactgagccaatgttggtgtagtttttacatg |
48045328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 48051493 - 48051574
Alignment:
| Q |
309 |
catgatgtaacaaacttcactcccattgattgatctcaggcccctgctcaagtgaaacaacaacatatgaatggaaagtacg |
390 |
Q |
| |
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|||||||||||||||||| |||||| |||||| |||| ||||||| || ||||||||||| |||||||| || ||||||| |
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| T |
48051493 |
catgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacg |
48051574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca |
88 |
Q |
| |
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||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
48056456 |
gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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