View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_20 (Length: 231)
Name: NF17784_low_20
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 10225516 - 10225405
Alignment:
| Q |
101 |
agaaaaagcaatctaaagcattaaaagttcagtacataaaaaatcattgaacaatatggnnnnnnnnttccaaatcaaaatcagtacattacatttgttt |
200 |
Q |
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| T |
10225516 |
agaaaaagtaatctaaagtattaaaagttcagtacataaaaaatcattgaacaatatggaaaaaaaattccaaatcaaaatcagtacattacatttgttt |
10225417 |
T |
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| Q |
201 |
agcagttcatat |
212 |
Q |
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|||||||||||| |
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| T |
10225416 |
agcagttcatat |
10225405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 10225621 - 10225579
Alignment:
| Q |
59 |
tagctacaaactaattaaagtttctctaatctgattacagcca |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10225621 |
tagctacaaactgattaaagtttctctaatctgattacagcca |
10225579 |
T |
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