View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_23 (Length: 214)
Name: NF17784_low_23
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 45103536 - 45103717
Alignment:
| Q |
16 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
115 |
Q |
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| T |
45103536 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
45103635 |
T |
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| Q |
116 |
ttatactttatgnnnnnnnataaatcgtaaatcattatgatcaac-nnnnnnnnntgttatgtatcatttatattttctcat |
196 |
Q |
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| T |
45103636 |
ttatactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcat |
45103717 |
T |
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