View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17784_low_24 (Length: 202)

Name: NF17784_low_24
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17784_low_24
NF17784_low_24
[»] chr7 (3 HSPs)
chr7 (31-186)||(3093952-3094107)
chr7 (113-181)||(21545251-21545319)
chr7 (114-171)||(26839606-26839663)
[»] chr1 (6 HSPs)
chr1 (113-192)||(50047741-50047820)
chr1 (117-172)||(11769404-11769459)
chr1 (114-184)||(30676079-30676149)
chr1 (113-184)||(23224029-23224100)
chr1 (138-178)||(12810836-12810876)
chr1 (113-184)||(18300431-18300503)
[»] chr6 (5 HSPs)
chr6 (123-184)||(16528299-16528360)
chr6 (113-171)||(17859884-17859942)
chr6 (137-171)||(15370144-15370178)
chr6 (139-171)||(15386583-15386615)
chr6 (148-192)||(19669997-19670041)
[»] chr8 (6 HSPs)
chr8 (114-178)||(15213156-15213220)
chr8 (113-184)||(12957161-12957232)
chr8 (114-178)||(24094809-24094873)
chr8 (114-184)||(32239916-32239986)
chr8 (132-181)||(23876613-23876662)
chr8 (113-178)||(29046702-29046767)
[»] chr5 (1 HSPs)
chr5 (132-184)||(17381395-17381447)
[»] scaffold0171 (2 HSPs)
scaffold0171 (113-184)||(6801-6872)
scaffold0171 (113-184)||(21975-22046)
[»] chr2 (3 HSPs)
chr2 (113-184)||(9504567-9504638)
chr2 (113-184)||(9515933-9516004)
chr2 (132-181)||(23909055-23909104)
[»] chr4 (1 HSPs)
chr4 (114-178)||(9782497-9782561)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 3093952 - 3094107
Alignment:
Q  31 ttggtaattcagcgactttcagtcaaagtgagtaataaacttatagcaaaggtgaaaatgaatattaaagcatattacacaatttgattagagttctaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3093952 ttggtaattcagcgactttcagtcaaagtgagtaataaacttatagcaaaggtgaaaatgaatattaaagcatataacacaatttgattagagttctaag 3094051  T
Q  131 ttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatgat 186  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  3094052 ttgaatcccttcttatgtgttggattcaattaataaagttttcatgcaattatgat 3094107  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 21545319 - 21545251
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaatt 181  Q
    |||||||||  ||||||| |||| |||||||||| |||||||||||||||||||||||| | |||||||    
T  21545319 tttgattaggcttctaagatgaaccccttcttatttgttggatttaattaataaagttttctttcaatt 21545251  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 26839663 - 26839606
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagttt 171  Q
    |||||||  |||| ||| |||| |||||||||| |||||||||| |||||||||||||    
T  26839663 ttgattaaggttccaagatgaaccccttcttatttgttggattttattaataaagttt 26839606  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 50047741 - 50047820
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatgatattctt 192  Q
    ||||||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||||| ||| | ||||||| |||||    
T  50047741 tttgattagagttataagatgaaccccttcttatttgttggattcaattaataaagtttctatttagttatgattttctt 50047820  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 11769459 - 11769404
Alignment:
Q  117 attagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttc 172  Q
    ||||| |||||||| |||| |||||||||| ||||||||| |||||||||||||||    
T  11769459 attagggttctaagatgaaccccttcttatttgttggattcaattaataaagtttc 11769404  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 30676079 - 30676149
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    |||||||  |||| ||| |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||    
T  30676079 ttgattaaggttcgaagatgaaccccttcttatttgttggattcaattaataaagttttcattcagttatg 30676149  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 23224029 - 23224100
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    ||||||| | |||||||| |||| |||||||||| ||||| ||| | ||||||||||||| ||||| |||||    
T  23224029 tttgatttgggttctaagatgaaccccttcttatatgttgcattcagttaataaagtttctattcagttatg 23224100  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 12810836 - 12810876
Alignment:
Q  138 ccttcttatgtgttggatttaattaataaagtttccattca 178  Q
    ||||||||| |||||||| ||||||||||||||| ||||||    
T  12810836 ccttcttatttgttggatataattaataaagttttcattca 12810876  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 18300503 - 18300431
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaatt-aataaagtttccattcaattatg 184  Q
    |||| |||| |||||||| |||| |||||||||| ||||| ||| |||| |||||||||| |||||| |||||    
T  18300503 tttgcttagggttctaagatgaaccccttcttatttgttgaattcaatttaataaagttttcattcagttatg 18300431  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 16528299 - 16528360
Alignment:
Q  123 gttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    |||||||| |||| |||||||||| |||||||||| |||||||||||||| |||||||||||    
T  16528299 gttctaagatgaaccccttcttatttgttggatttcattaataaagtttctattcaattatg 16528360  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 17859942 - 17859884
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagttt 171  Q
    |||||||||||||| ||| ||||  ||||||||| ||||||||| ||||||||||||||    
T  17859942 tttgattagagttccaagatgaacaccttcttatttgttggattcaattaataaagttt 17859884  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 15370144 - 15370178
Alignment:
Q  137 cccttcttatgtgttggatttaattaataaagttt 171  Q
    |||||||||| ||||||||||||||||||||||||    
T  15370144 cccttcttatttgttggatttaattaataaagttt 15370178  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 15386583 - 15386615
Alignment:
Q  139 cttcttatgtgttggatttaattaataaagttt 171  Q
    |||||||| ||||||||||||||||||||||||    
T  15386583 cttcttatttgttggatttaattaataaagttt 15386615  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 19670041 - 19669997
Alignment:
Q  148 tgttggatttaattaataaagtttccattcaattatgatattctt 192  Q
    |||||||||  ||||||||||||| |||||||||||||| |||||    
T  19670041 tgttggattcgattaataaagttttcattcaattatgattttctt 19669997  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 15213220 - 15213156
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattca 178  Q
    |||||||  |||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||||||    
T  15213220 ttgattatggttctaagatgaatcccttcttatctgttggattcaattaataaaattttcattca 15213156  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 12957161 - 12957232
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    |||||||||  ||||||  ||||| ||||||||| |||||||||| |||||||||||||  |||||||||||    
T  12957161 tttgattaggattctaaaatgaatgccttcttatttgttggatttcattaataaagtttgtattcaattatg 12957232  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 24094809 - 24094873
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattca 178  Q
    |||||||  |||||||| | ||||||||||||| ||||||||| |||||||||||| | ||||||    
T  24094809 ttgattacggttctaagattaatcccttcttatttgttggattcaattaataaagtcttcattca 24094873  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 32239916 - 32239986
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    |||||||| ||| |||| |||| | |||||||| ||||||||| ||||||||||||||  |||| ||||||    
T  32239916 ttgattagggttttaagatgaacctcttcttatttgttggattcaattaataaagtttatattcgattatg 32239986  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 23876613 - 23876662
Alignment:
Q  132 tgaatcccttcttatgtgttggatttaattaataaagtttccattcaatt 181  Q
    |||||| |||||||| ||||||||| ||||||||||||||  ||||||||    
T  23876613 tgaatcacttcttatttgttggattcaattaataaagtttttattcaatt 23876662  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 29046767 - 29046702
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattca 178  Q
    ||||||||| |||| | | |||| |||||||||| ||||||| || ||||||||||||| ||||||    
T  29046767 tttgattagggttccacgatgaaccccttcttatttgttggaatttattaataaagttttcattca 29046702  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 17381447 - 17381395
Alignment:
Q  132 tgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||    
T  17381447 tgaatcccttcttatttgttggattcaattaataaagttttcattcaaatatg 17381395  T

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Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 6801 - 6872
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    ||||||||| | |||||| |||| |||||||||| ||||||||| ||||||||||  || ||||||||||||    
T  6801 tttgattagggctctaagatgaaccccttcttatttgttggattcaattaataaatatttcattcaattatg 6872  T

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Target: scaffold0171; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 21975 - 22046
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    |||||||| ||||||||| |||| ||||||| || |||||||||  |||||||||||||  |||||||||||    
T  21975 tttgattatagttctaagatgaaccccttctaatttgttggattccattaataaagtttttattcaattatg 22046  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 9504567 - 9504638
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||  ||||| |||||||  ||||| |||||    
T  9504567 tttgattatggttctaagatgaatcccttcttatttgttggattccattaacaaagtttttattcagttatg 9504638  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 9515933 - 9516004
Alignment:
Q  113 tttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattcaattatg 184  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||  ||||| |||||||  ||||| |||||    
T  9515933 tttgattatggttctaagatgaatcccttcttatttgttggattccattaacaaagtttttattcagttatg 9516004  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 23909104 - 23909055
Alignment:
Q  132 tgaatcccttcttatgtgttggatttaattaataaagtttccattcaatt 181  Q
    ||||||||||||||| ||||||| || ||||||||||||| |||| ||||    
T  23909104 tgaatcccttcttatttgttggaatttattaataaagttttcatttaatt 23909055  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 9782561 - 9782497
Alignment:
Q  114 ttgattagagttctaagttgaatcccttcttatgtgttggatttaattaataaagtttccattca 178  Q
    |||||||| |||| | | |||| |||||||||| ||||||| || ||||||||||||| ||||||    
T  9782561 ttgattagggttccacgatgaaccccttcttatttgttggaatttattaataaagttttcattca 9782497  T

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