View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_3 (Length: 470)
Name: NF17784_low_3
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 31731766 - 31732216
Alignment:
| Q |
1 |
attttgttttgaaaaagacaccagacattaatctattggttcaaaattgcatatttttattggtgttttgtggaccacaatatatggtggctcacatcac |
100 |
Q |
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| T |
31731766 |
attttgttttgaaaaagacaccagacattaatctattggttcaaaattgcatatttttattggtgttttgtggaccacaatatatggtggctcccatcac |
31731865 |
T |
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| Q |
101 |
atataaacatcacatgaattaaggaggagaaaacgattggtttcgttttctgctgccaatgaatacttatagtacattctctaatcttccttcatcaaat |
200 |
Q |
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| T |
31731866 |
atataaacatcgcatgaattaaggaggagaaaacgattggtttcgttttctgctgccaatgaatacttatagtacattctctaatcttcctgcatcaaat |
31731965 |
T |
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| Q |
201 |
taattaaatggctagttggaccattgtgttgtcacaccttgaattgaactagatatcatgtgatacttccacactc-aaacacaaaagatatcatgtgat |
299 |
Q |
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| T |
31731966 |
taattaaatggctagttggaccatggtgttgtcacaccttgaattgaactagatatcatgtgatacttccacactcaaaacacaaaagatatcatgtgat |
31732065 |
T |
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| Q |
300 |
acaaaccttatagaaaatgggaaaatattcagcactatgattagttgggccagtaattgcatggtaagagattgccgaatatagcagttgatgttcagaa |
399 |
Q |
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| T |
31732066 |
acaaaccttatagaaaattggaaaatatacagcactatgattagttgggccagtaattgcatggtaagagattgccgaatatagcagttgatgttcagaa |
31732165 |
T |
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| Q |
400 |
aatccgaatgagacgtttcttatgctgctatggttggacggaccactattc |
450 |
Q |
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| T |
31732166 |
aatccgaatgagacgtttcttatgctgctatggttggacggaccactattc |
31732216 |
T |
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