View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_4 (Length: 363)
Name: NF17784_low_4
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 51154235 - 51153892
Alignment:
| Q |
17 |
acatgtgaagtatttgacttcggaaagaatcatcttctgagtttcatgagactccaacatgattttccacgattgtgttaggctgcatttggaaaatgga |
116 |
Q |
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| T |
51154235 |
acatgtgaagtatttgacttcggaaagaatcatcttctgagtttcatgagactccaacatgattttccacgattgtgttaggctgcatttggaaaatgga |
51154136 |
T |
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| Q |
117 |
aaatgataaatcaatgaattcaaaactatttagtctccttttagaatgaagttctatattatctcaccctttcaatagttcaacaatttgaggctgtaat |
216 |
Q |
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| T |
51154135 |
aaatgataaatcaatgaattcaaaactatttagtctccttttagaatgaagttctatattatctcaccctttcaatagttcaacaatttgaggctgtaat |
51154036 |
T |
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| Q |
217 |
tcttcgtctctcattttctgaattctctttgagatcgactctgcacgtcgaattgcaaccaagatcccagcatacagatctttcatatcagctctagtct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51154035 |
tcttcgtctctcattttctgaattctctttgagatcgactctgcacgtcgaattgcaaccaagatcccagcatacagatctttcatatcagctctagtct |
51153936 |
T |
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| Q |
317 |
tgtccatgcttaattcatcatctcctctaacattcttatctctc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51153935 |
tgtccatgcttaattcatcatctcctctaacattcttatttctc |
51153892 |
T |
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