View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17784_low_5 (Length: 354)
Name: NF17784_low_5
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 44870395 - 44870741
Alignment:
| Q |
1 |
ctactcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
44870395 |
ctactcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatgttgctccttggtagccacaaaaactatctc |
44870494 |
T |
|
| Q |
101 |
tgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44870495 |
tgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgttta |
44870594 |
T |
|
| Q |
201 |
tgttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44870595 |
tgttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctg |
44870694 |
T |
|
| Q |
301 |
cattcaacttatgcttctcttgactaaactcattagaagtataatct |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44870695 |
cattcaacttatgcttctcttgactaaactcattagaagtaaaatct |
44870741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47529403 - 47529065
Alignment:
| Q |
1 |
ctactcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctc |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||| || | |||||| |||| ||||||||||| |
|
|
| T |
47529403 |
ctactcctaagcgagtcaattgtttctcaagttcatccatcaacaaacgacacattccttgtcctcgatgttctttcttggtggccaagaaaactatctc |
47529304 |
T |
|
| Q |
101 |
tgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgttta |
200 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
47529303 |
agcaaccttgtgaccataaatccttatagtagccaccgaaatcacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgctta |
47529204 |
T |
|
| Q |
201 |
tgttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctg |
300 |
Q |
| |
|
||| | || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
47529203 |
tgtaccgagtctctactaaaaacaatgtctctaatcaactctcttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagcca |
47529104 |
T |
|
| Q |
301 |
cattcaacttatgcttctcttgactaaactcattagaag |
339 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||| ||||| |
|
|
| T |
47529103 |
catttaacttacgcttcttttgactaaactcatcagaag |
47529065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 328
Target Start/End: Complemental strand, 47524029 - 47523704
Alignment:
| Q |
3 |
actcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctctg |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
47524029 |
actcctaagcgtgtcaactgttcctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagctacaaaaactatctctg |
47523930 |
T |
|
| Q |
103 |
caaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatg |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||| ||||||||| ||||||||| | | ||||||||||||||||| |
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|
| T |
47523929 |
caaccttttgaccataaatccttatagttgcaaccgaaatgactttacccattttctctaaaatcacattatagaaactatgaaagttcaagcgtttatg |
47523830 |
T |
|
| Q |
203 |
ttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctgca |
302 |
Q |
| |
|
|| ||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||| | |
|
|
| T |
47523829 |
ttgtgagcctctactaaaaacaacatctttaatcaattctcttccggataaagcatcaatagttgggttaaaactctcatacaatacatcaagagccata |
47523730 |
T |
|
| Q |
303 |
ttcaacttatgcttctcttgactaaa |
328 |
Q |
| |
|
|||||||| ||||| ||||||||| |
|
|
| T |
47523729 |
ttcaactttatcttcttttgactaaa |
47523704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 47551078 - 47550815
Alignment:
| Q |
3 |
actcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctctg |
102 |
Q |
| |
|
||||||||| | |||| |||||||||||| | | ||||||||||| |||||||||| ||| |||||||| | ||||| |||| ||||| ||||| | |
|
|
| T |
47551078 |
actcctaagttaatcaattgttcctcaagccccttcatcaacaaacaacacattccttgtcttcgatatttttttttggtggccatgaaaacaatctcag |
47550979 |
T |
|
| Q |
103 |
caaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatg |
202 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| || |||||| ||| |||||| | ||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
47550978 |
caaccttttgaccataaatccttacggttgccacataactcactttaccccctttctctataatcacagtatagaaaccacgaaagttcaaacgtttctc |
47550879 |
T |
|
| Q |
203 |
ttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagtt |
266 |
Q |
| |
|
|||||| ||||||||| |||| ||||| |||||| ||| || ||||||| |||||||||| |
|
|
| T |
47550878 |
ttctgaggatctactaaacacaacatcttcaatcaaatcttttttggataaaggatcaatagtt |
47550815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 9819550 - 9819858
Alignment:
| Q |
3 |
actcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctctg |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||| ||| ||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
9819550 |
actcctaagcgagttaactgtttctcaatctcatccatcaacaaatgacacattccttgtcgtcgatattgttccttggtggccacgaaaactacctctg |
9819649 |
T |
|
| Q |
103 |
caaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatg |
202 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||| ||||| ||||| || || |
|
|
| T |
9819650 |
caaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtg |
9819749 |
T |
|
| Q |
203 |
ttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctgca |
302 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9819750 |
ttctgattctctgctaaaaacaacatctttaatcaactctcttcctgataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccata |
9819849 |
T |
|
| Q |
303 |
ttcaactta |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
9819850 |
ttcaactta |
9819858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 311
Target Start/End: Complemental strand, 9854430 - 9854122
Alignment:
| Q |
3 |
actcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatattgctccttggtagccacaaaaactatctctg |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||||||| |||| |||||| ||| ||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
9854430 |
actcctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctg |
9854331 |
T |
|
| Q |
103 |
caaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatg |
202 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||| ||||| ||||| || || |
|
|
| T |
9854330 |
caaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtg |
9854231 |
T |
|
| Q |
203 |
ttctgaatctctactaaaaacaagatctttaatcaactctcttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctgca |
302 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9854230 |
ttctgattctctgctaaaaacaacatctttaatcaactctcttcctgataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccata |
9854131 |
T |
|
| Q |
303 |
ttcaactta |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
9854130 |
ttcaactta |
9854122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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