View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_7 (Length: 318)
Name: NF17784_low_7
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 28418932 - 28418698
Alignment:
| Q |
62 |
catttgtacgagggatctaagatttgtaagagatcaacaacatctcatgtgatgagatgtctataaattgtacgaggtatctaagatgttgtacttatcc |
161 |
Q |
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| T |
28418932 |
catttgtacgagggatctaacatttgtaagagatcaacaacatctcatgtgatgtgatgtctataaattgtacgaggtatctaagttgttgtacttatcc |
28418833 |
T |
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| Q |
162 |
tcttnnnnnnnnnnnnnnnnncttgttgcccttattaacatgtatcgtcaatgcctatatttgtttatgaggcggaattgtattaaagacacatctagtt |
261 |
Q |
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| T |
28418832 |
ccttaaaaaaaaa--------cttgttgcccttattaacatgtctcgtcaatgcctatatttgtttatgaggcggaattgtattaaagacacatctagtt |
28418741 |
T |
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| Q |
262 |
tgaagtgacaatttatagcttttgtattttcatggtgagagtg |
304 |
Q |
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| T |
28418740 |
tgaagtgacaatttatagcttttgtattttcatggtgagagtg |
28418698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 33122199 - 33122231
Alignment:
| Q |
261 |
ttgaagtgacaatttatagcttttgtattttca |
293 |
Q |
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| T |
33122199 |
ttgaagtgacaatttctagcttttgtattttca |
33122231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 5659794 - 5659847
Alignment:
| Q |
10 |
gttattattttaaattgcggtgttgcggttgctgttttcgcttcaggtgcaaca |
63 |
Q |
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| T |
5659794 |
gttattatttgaagttgcggtgttgcggttgctgtttacgcatcaggtacaaca |
5659847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 16088038 - 16087984
Alignment:
| Q |
9 |
ggttattattttaaattgcggtgttgcggttgctgttttcgcttcaggtgcaaca |
63 |
Q |
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| T |
16088038 |
ggttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaaca |
16087984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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