View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_9 (Length: 302)
Name: NF17784_low_9
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 6508134 - 6507953
Alignment:
| Q |
73 |
ttgtactcttgattggtttgatatttaatatatttttgcatttnnnnnnnngacattaacataatgtccttttccttcactcaatgatcaagtcagtgtc |
172 |
Q |
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| T |
6508134 |
ttgtactcttgattggtttgatatttaatatatttttgcctttaaaaaaaagacattaacataatgtctttttccttctctcaatgatcaagttagtgtc |
6508035 |
T |
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| Q |
173 |
tttaaaagacttgccactacttccattctattctattctattctatgctctctcctcaattcacttgtcatattcttcttccctt |
257 |
Q |
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| T |
6508034 |
tttaaaagacttgccactacttccattctattctatgc---tctctactctctcctcaattcacttgtcgtattcttcttccctt |
6507953 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 6508187 - 6508153
Alignment:
| Q |
41 |
attatactaaaaagagtttgtatttgtgttgtttg |
75 |
Q |
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| T |
6508187 |
attatactaaaaagagtttgtatttgtgttgtttg |
6508153 |
T |
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