View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17785_high_5 (Length: 345)
Name: NF17785_high_5
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 18869593 - 18869908
Alignment:
| Q |
21 |
cctggtctgtaatttcgccttcagtgttcaagctccgcagcgaaacctttttcaggtatgtagaaaattgtatccgtcattttatgtagcaccgacaatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18869593 |
cctggtctgtaatttcgccttcagtgttcaagctccgcagcgaaacatttttcaggtatgtagaaaattgtatcagtcattttatgtagcaccgacaatt |
18869692 |
T |
|
| Q |
121 |
catatagaaggagtttctgttgtctggcacatgtcggtgttagacaccaacataacattgacacatgtcatgacattcaatcacttccattctgttagta |
220 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18869693 |
cacatagaaggagtttctgttgtctggcacatgtcggtgttagacaccaacataacattgacacatgtcatgacattcaatcacttccattctgttagta |
18869792 |
T |
|
| Q |
221 |
ttgtgtccggtgtccttgtctgtgtcatttcttcatatcattcaatttgtatatattacttggtccannnnnnnnnnnnnggttcatcccaaagattggt |
320 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18869793 |
ttgtgtccggtgtccttgtctgtgtcaattcttcatatcattcaatttgtatatattacttggtccatttttttatttttggttcatcccaaagattggt |
18869892 |
T |
|
| Q |
321 |
atttatatatgatgat |
336 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18869893 |
atttatatatgatgat |
18869908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 10386102 - 10386048
Alignment:
| Q |
152 |
tgtcggtgttagacaccaacataacattgacacatgtcatgacattcaatcactt |
206 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| || | |||||||||||| |
|
|
| T |
10386102 |
tgtcggtgtcagacatcaacacaacattgacacatgtaattatattcaatcactt |
10386048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University