View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17785_low_1 (Length: 440)
Name: NF17785_low_1
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 361673 - 361256
Alignment:
| Q |
8 |
aatgaaaacacatcaccactggtaacaaatcgagaacatgagttaaggatgtaatcacgtgtgtcggtagggtacactaacatatggacactagtaataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
361673 |
aatgaaaacacatcaccactggtaacaaatcgagaacatgagttaaggatgtaatcacgtgtatcggtatggtacactaacatatggacacttgtaataa |
361574 |
T |
|
| Q |
108 |
tgttagaaatttattgaatataatcacatgtgtatatagttgtcgtattagtgtcggagaccataatgaagtgtatatgttccaactaattagctaccta |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
361573 |
tgttaaaaatttattgaatataatcacatgtgtatatagttgtcgtattagtgttggagaccatgatgaagtgtatatgtttcaactaattagctaccta |
361474 |
T |
|
| Q |
208 |
acaatttagcattgacacatcacaaatcatattgaagatatgtctagtgttcgaaaataatgacacgaaattttcacatgtagtttttcggttacaatat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361473 |
acaatttagcattgacacatcacaaatcatattgaagatatgtctagtgttggaaaataatgacacgaaattttcacatgtagtttttcggttacaatat |
361374 |
T |
|
| Q |
308 |
atgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactatggcaacta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
361373 |
atgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactgtggcaacta |
361274 |
T |
|
| Q |
408 |
gtgcaaatgcacgaattg |
425 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
361273 |
gtgcaaatgcatgaattg |
361256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University