View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_11 (Length: 254)
Name: NF17785_low_11
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 28306219 - 28305993
Alignment:
| Q |
15 |
agtaataactatatattttattacgttgttcaattcaatctgattgaacttgtcacattttatgcaccttttatattcatttatatagctgtatcttgct |
114 |
Q |
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| T |
28306219 |
agtaataactatatattttattacgttgttcaattcaatctgattgaacttgtcacattttatgcaccttttatattcatttatatagctgtctcttgct |
28306120 |
T |
|
| Q |
115 |
gcatcaatttttcaaaatatcatttatatgttgaagatcatttggattggcaaaactcattgtttctgttgatttctttagaaattactcaaggcatggc |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28306119 |
gcatcaatttttcaaaatatcattcatatgttgaagatcatttggattggcaaaactcattgtttctgttgatttctttagaaattactcaaggcatggc |
28306020 |
T |
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| Q |
215 |
tcctagtttctatacccttcctttgtt |
241 |
Q |
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|||| |||||||||||||||| ||||| |
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| T |
28306019 |
tccttgtttctatacccttccattgtt |
28305993 |
T |
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