View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_12 (Length: 251)
Name: NF17785_low_12
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 5959925 - 5960151
Alignment:
| Q |
7 |
gtgagaagaaaagagggcaaagcctaaaaacaaaaacaactaacaaactacatgattattttcaataggcttacaattttctaaaactatattaattata |
106 |
Q |
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| T |
5959925 |
gtgaaaagaaaagagggcaaagcctaaaaacaaaaacaactaacaaactacatgattattttcaataagcttacaattttctaaaactatattaattata |
5960024 |
T |
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| Q |
107 |
agcttgaagtcactttctattacgagacgagtaaaattgtcttctcaccaagtgtactcttgtatatagtcttcccattttagtatgaagggcgtcacaa |
206 |
Q |
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| T |
5960025 |
agcttgaagtcactttctattatgagacgagtaaaattgtcttctcaccaagtgtactcttgtatatagtctccccattttagtatgaagggcgtcacaa |
5960124 |
T |
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| Q |
207 |
gcaccaataatttgagtatactacttc |
233 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
5960125 |
gcaccaatgatttgagtatactacttc |
5960151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 5961057 - 5961150
Alignment:
| Q |
12 |
aagaaaagagggcaaagcctaaaaac--aaaaacaactaacaaactacatgattattttcaataggcttacaattttctaaaactatattaatt |
103 |
Q |
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||||| |||||||||||| |||| | |||||||||||| ||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| |
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| T |
5961057 |
aagaagagagggcaaagcttaaataagaaaaaacaactaaaaaactacatgaacattttcattaagcttacaatttcctaaaaccatattaatt |
5961150 |
T |
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