View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_13 (Length: 238)
Name: NF17785_low_13
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 5719807 - 5720012
Alignment:
| Q |
19 |
gaagtgcattcaacatattcacgctcaactacattttcctcaagaaattctattggattgagtagctgaaaattattaacaaaatctaattcattaatat |
118 |
Q |
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| T |
5719807 |
gaagtgcattcaacatattcacgctcaactacattttcctcaagaaattctattggattgagtagctgaaaattattaacaaaatctatttcattaatat |
5719906 |
T |
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| Q |
119 |
ggtgtatatactatagtttgaaatgaaaagatgccatttattcacatatagaacaattaatgtatgatttctnnnnnnntaattaccacgtatgcttatt |
218 |
Q |
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| T |
5719907 |
ggtgtatatactatagtttgaaatgaaaagatgccatttattcacatatagaacaattaatgtatgatttctaaaaaaataattaccacgtatgcttatt |
5720006 |
T |
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| Q |
219 |
cgagat |
224 |
Q |
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|||||| |
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| T |
5720007 |
cgagat |
5720012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5687691 - 5687860
Alignment:
| Q |
19 |
gaagtgcattcaacatattcacgctcaactacattttcctcaagaaattctattggattgagtagctgaaaattattaacaaaatctaattcattaatat |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
5687691 |
gaagtgcattcaacatattcacgctcaactacaatttcctcaagaaattcaattggattgagtagctgaaaattaataacaaaatctaattaattaatat |
5687790 |
T |
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| Q |
119 |
ggtgtatatactatagtttgaaatgaaaagatgccatttattcacatatagaacaattaatgtatgattt |
188 |
Q |
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| T |
5687791 |
ggtgtgtatactatattttgaaatgaaaagatggtatttattcacatacagaacaattcatgtatgattt |
5687860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 5666621 - 5666776
Alignment:
| Q |
19 |
gaagtgcattcaacatattcacgctcaactacattttcctcaagaaattctattggattgagtagctgaaaattattaacaaaatctaattcattaatat |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | || ||||| |||||||| |
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| T |
5666621 |
gaagtgcattcaacatattcacgctcaactacaatttcctcgagaaattctattggattgagtagctgaaaattaataac-agatgtaattaattaatat |
5666719 |
T |
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| Q |
119 |
ggtgtatatactatagtttgaaatgaaaagatgccatttattcacatatagaacaat |
175 |
Q |
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|| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5666720 |
ggcgtatatgctatattttgaaatgaaaagatgatatttattcacatatagaacaat |
5666776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 166282 - 166202
Alignment:
| Q |
21 |
agtgcattcaacatattcacgctcaactacattttcctcaagaaattctattggattgagtagctgaaaattattaacaaa |
101 |
Q |
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|||||| |||||||||||| | ||||||||| | ||| ||| ||||||| | |||||||||| |||||||| | ||||||| |
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| T |
166282 |
agtgcactcaacatattcatgttcaactacaatgtccacaaaaaattctgtgggattgagtacctgaaaataaataacaaa |
166202 |
T |
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