View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_2 (Length: 422)
Name: NF17785_low_2
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 11629447 - 11629821
Alignment:
| Q |
20 |
tttcgcatgtagttaatggtaaggttgttgtagcgaaaaacccgtgcttgtaccctggcgatgttcgtattttgaaggctgtggatgtgccggctttgcg |
119 |
Q |
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| T |
11629447 |
tttctcatgtagttaacggcaaggttgttgtagcaaaaaacccgtgcttgtacccaggtgatgttcgtgttttgaaggctgtggatgtgccagctttgcg |
11629546 |
T |
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| Q |
120 |
ccatatggtggattgtgttgttttccctcaaaaaggtcacaggtagatatattcttaaatatctcaaccattatgcatgttcaacaaaacattattttta |
219 |
Q |
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| T |
11629547 |
ccacatggtggactgtgttgtttttcctcaaaaaggtcacaggtagatatattcttaaacatctcaaccattatgcatgttcaacaaaacactattttta |
11629646 |
T |
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| Q |
220 |
taggattatttatgtaatataacatttaatttttgctttccataaataactaactttctctaaaatatgtgtaagtgatcttgggaaaagttataagagt |
319 |
Q |
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| T |
11629647 |
taggattatttatgtaatataacatttaatttttgctttccataaataactaactttctccaaaatttgtgtaagtgaacttgggaaaagttattagagt |
11629746 |
T |
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| Q |
320 |
gctacatttctctactaaatatgttgctgatggtacttacaaaataatgcacccaatccgatgcttataatgttc |
394 |
Q |
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| T |
11629747 |
gctacatttctctactaaatatgttgctgatacttcttacaaaataatgcatccaatccaatgcttaaaatgttc |
11629821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 11638223 - 11638421
Alignment:
| Q |
27 |
tgtagttaatggtaaggttgttgtagcgaaaaacccgtgcttgtaccctggcgatgttcgtattttgaaggctgtggatgtgccggctttgcgccatatg |
126 |
Q |
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| T |
11638223 |
tgtagttaagggtatggtcatagtagcgaaaaatccctgcttgcacccgggcgatgttcgtgttttgaaagccgtggatgtgcctgctttgcgccacatg |
11638322 |
T |
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| Q |
127 |
gtggattgtgttgttttccctcaaaaaggtcacaggtagatatattcttaaatatctcaaccattatgcatgttcaacaaaacattatttttataggat |
225 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | |||| |||||||||||||| |
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| T |
11638323 |
gtggattgtgttgtttttcctcaaaaaggtcacaggtagatctattcttaaatatctcaaccattgtgcatggtcaatagaacactatttttataggat |
11638421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 11676593 - 11676432
Alignment:
| Q |
20 |
tttcgcatgtagttaatggtaaggttgttgtagcgaaaaacccgtgcttgtaccctggcgatgttcgtattttgaaggctgtggatgtgccggctttgcg |
119 |
Q |
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|||| ||||| || || ||| |||| || ||||| ||||| || |||||| |||| || ||||| ||| |||||||||||||||| ||||| |||||||| |
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| T |
11676593 |
tttctcatgttgtgaaaggtgaggtagtagtagcaaaaaatccctgcttgcacccgggtgatgtgcgtgttttgaaggctgtggacgtgcctgctttgcg |
11676494 |
T |
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| Q |
120 |
ccatatggtggattgtgttgttttccctcaaaaaggtcacaggtagatatattcttaaatat |
181 |
Q |
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| T |
11676493 |
ccacatggtggattgtgttgttttccctcaaaaaggtcacaggtaggtatattcttcaatat |
11676432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 11684330 - 11684169
Alignment:
| Q |
20 |
tttcgcatgtagttaatggtaaggttgttgtagcgaaaaacccgtgcttgtaccctggcgatgttcgtattttgaaggctgtggatgtgccggctttgcg |
119 |
Q |
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|||| ||||| || || |||||||| || ||||| ||||| || |||||| |||| || ||||| ||| |||||||||||||||| ||||| |||||||| |
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| T |
11684330 |
tttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggtgatgtgcgtgttttgaaggctgtggacgtgcctgctttgcg |
11684231 |
T |
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| Q |
120 |
ccatatggtggattgtgttgttttccctcaaaaaggtcacaggtagatatattcttaaatat |
181 |
Q |
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| T |
11684230 |
ccacatggtggattgtgttgtattccctcaaaaaggccacaggtagatatattctttaatat |
11684169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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