View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_3 (Length: 401)
Name: NF17785_low_3
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 41995868 - 41996060
Alignment:
| Q |
11 |
cattgttcttgttatatctcgtagaactaatagattggttgtagctgaatatatatcactatgatggttaaatataaaaatttatttccttacttgcaag |
110 |
Q |
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| T |
41995868 |
cattgttcttgttatatctcgtagaactaatagattggttgtagctgaatatatatcactatgatggttaaatataaaaatttatttccttacttgcaag |
41995967 |
T |
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| Q |
111 |
caaatgttttaaaaatggatatggagatcgaacggtgagatctctagtcattgttaaattggttcaatcaatttaaccaagattgaacccaat |
203 |
Q |
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| T |
41995968 |
caaatgttttaaaaatggatatggagatcgaacggtgagatctctagtcattgttaaattggttcaatcaatttaaccaagattgaacccaat |
41996060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 41996103 - 41996214
Alignment:
| Q |
246 |
ccaattaaataaattgtgattcaagcatggtttaatccgattcaatcagacttcaattcagctgaaattaatttaacgaccaaactagtagttttcaatt |
345 |
Q |
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| T |
41996103 |
ccaattaaataaattgtgattcaagcatggtttaatccgattcaatcaaactacaattcagctgaaattaatttaacgaccaaactagt-gttttcaatt |
41996201 |
T |
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| Q |
346 |
caaccagcggaat |
358 |
Q |
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| T |
41996202 |
caaccagcggaat |
41996214 |
T |
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