View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_4 (Length: 389)
Name: NF17785_low_4
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 35806951 - 35806565
Alignment:
| Q |
1 |
ggcgattgccacttcgtctacagacaagaaagaaaagaaaaagaatagtggtcaattgtctattcgcttctatctcaccccaaatcatttgcttagccaa |
100 |
Q |
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| T |
35806951 |
ggcgattgccacttcgtctacagacaagaaagaaaagaaaaagaatagtggtcaattgtctattcgcttctatctcaccccaaatcatttgcttagccaa |
35806852 |
T |
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| Q |
101 |
tgaaactcctgagtcttgacaaatacaagtattaaaataacaaccaaatgtgctaaaaagttacatattttgtacattttcataatttaggctctctata |
200 |
Q |
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| T |
35806851 |
tgaaactcctgagtcttgacaaatacaagtattaaaataacaaccaaatgtgctaaaaagttacatattttgtacatttccataatttaggctctctcta |
35806752 |
T |
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| Q |
201 |
aaaaccaccattgaaggacacaggacgcacttagcaattgaaaagagttggattttattatagaaagagatggtatcaggtaatctaacagcaaatgagg |
300 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35806751 |
aaaaccaccattgaagg--acaggacgcacttagcaaatgaaaagagttggattttattatagaaagagatagtatcaggtaatctaacagcaaatgagg |
35806654 |
T |
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| Q |
301 |
aactaattttcgataagatccacatgtaacactgataaggggaattactggcacctaagttttgcaatttgttgttattatatgcattt |
389 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35806653 |
aactaattttcgataagaaccacatgtaacactgataaggggaattactggcacctaagttttgcaatttgttgttattatatgcattt |
35806565 |
T |
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