View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_5 (Length: 371)
Name: NF17785_low_5
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 50464856 - 50465199
Alignment:
| Q |
13 |
aacaaatgtgtccttcattggcattaaaataaaaccattacccatttatggcaaaagtaggaaattttcccataaccttttagtagggttgagagaggca |
112 |
Q |
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| T |
50464856 |
aacaaatgtgtccttcattggcattaaaataaaaccattacacatttatggcaaaagtaggaaattttcccataaccttttagtagggttgagagaggca |
50464955 |
T |
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| Q |
113 |
aaaatttagaaaacaaagtgaagtcagtaaggtataaaattagtgaaattaggtgaaaaagacatttatggcatattataagtgaaatatttgtggttgg |
212 |
Q |
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| T |
50464956 |
aaaatttagaaaacaaagtgaagtcagtaaggtataaaattagtgaaattaggtgaaaaagacatttatggcatattataagtgaaatatttgtggttgg |
50465055 |
T |
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| Q |
213 |
aatagagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtgatgtttttaaagagggaacggttgcatca |
312 |
Q |
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| T |
50465056 |
aatagagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtgatgtttttaaagagggaacggttgcatca |
50465155 |
T |
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| Q |
313 |
cgcatactgtatctatttattagaaaaggatggttttgagatct |
356 |
Q |
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| T |
50465156 |
cgcatactgtatctatttattagaaaaggatggttttgagatct |
50465199 |
T |
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