View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17785_low_6 (Length: 349)

Name: NF17785_low_6
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17785_low_6
NF17785_low_6
[»] scaffold0634 (1 HSPs)
scaffold0634 (43-346)||(2854-3156)
[»] scaffold0026 (2 HSPs)
scaffold0026 (114-346)||(12534-12765)
scaffold0026 (8-103)||(12437-12543)
[»] chr2 (18 HSPs)
chr2 (11-321)||(26582992-26583313)
chr2 (115-321)||(23168954-23169160)
chr2 (115-321)||(23580211-23580417)
chr2 (42-227)||(23089594-23089779)
chr2 (83-342)||(23062869-23063127)
chr2 (14-227)||(23101994-23102207)
chr2 (50-150)||(23878325-23878425)
chr2 (39-154)||(21907750-21907865)
chr2 (93-244)||(26884489-26884639)
chr2 (82-227)||(24660876-24661021)
chr2 (8-145)||(5706610-5706759)
chr2 (52-154)||(29281368-29281470)
chr2 (71-178)||(25181501-25181606)
chr2 (5-103)||(23264515-23264613)
chr2 (52-145)||(9957-10050)
chr2 (114-342)||(23264301-23264524)
chr2 (82-154)||(27208322-27208394)
chr2 (82-154)||(27210657-27210729)
[»] chr6 (21 HSPs)
chr6 (11-318)||(29614738-29615053)
chr6 (39-342)||(25396369-25396671)
chr6 (44-222)||(18799754-18799932)
chr6 (42-227)||(21565751-21565936)
chr6 (8-192)||(12167637-12167832)
chr6 (8-192)||(19286546-19286741)
chr6 (52-192)||(19877730-19877870)
chr6 (8-192)||(19883506-19883701)
chr6 (42-244)||(19300308-19300509)
chr6 (71-192)||(19786529-19786650)
chr6 (8-145)||(34640575-34640724)
chr6 (8-145)||(34647249-34647398)
chr6 (50-219)||(19471914-19472082)
chr6 (8-103)||(24513370-24513465)
chr6 (52-145)||(20008529-20008622)
chr6 (8-154)||(25470290-25470448)
chr6 (10-132)||(21365067-21365200)
chr6 (10-132)||(23969049-23969182)
chr6 (8-59)||(19786455-19786506)
chr6 (10-59)||(19877874-19877923)
chr6 (114-177)||(9186841-9186903)
[»] scaffold0456 (4 HSPs)
scaffold0456 (114-281)||(241-407)
scaffold0456 (114-281)||(7386-7552)
scaffold0456 (8-92)||(409-504)
scaffold0456 (8-92)||(7554-7649)
[»] chr3 (13 HSPs)
chr3 (52-344)||(41455741-41456034)
chr3 (50-346)||(18914295-18914590)
chr3 (14-154)||(55499658-55499798)
chr3 (44-154)||(16802029-16802139)
chr3 (63-245)||(13324381-13324562)
chr3 (11-144)||(24192274-24192418)
chr3 (114-245)||(13302844-13302974)
chr3 (114-245)||(13313520-13313650)
chr3 (52-154)||(14865216-14865319)
chr3 (9-58)||(10390034-10390083)
chr3 (9-58)||(10415123-10415172)
chr3 (9-58)||(10421793-10421842)
chr3 (44-109)||(12034007-12034072)
[»] chr7 (23 HSPs)
chr7 (52-317)||(13742860-13743121)
chr7 (5-227)||(16676623-16676845)
chr7 (5-227)||(17650859-17651081)
chr7 (11-317)||(13123506-13123822)
chr7 (61-317)||(12710496-12710751)
chr7 (8-192)||(13006706-13006901)
chr7 (83-321)||(46625166-46625403)
chr7 (83-342)||(13678649-13678906)
chr7 (44-154)||(11389910-11390020)
chr7 (50-128)||(20311631-20311709)
chr7 (8-143)||(12591230-12591377)
chr7 (62-177)||(11383440-11383554)
chr7 (52-154)||(16090457-16090559)
chr7 (82-154)||(14320243-14320315)
chr7 (39-128)||(21231554-21231643)
chr7 (52-132)||(2464758-2464838)
chr7 (52-132)||(3858007-3858087)
chr7 (10-59)||(3857953-3858003)
chr7 (288-342)||(18607285-18607339)
chr7 (52-142)||(29181690-29181780)
chr7 (61-109)||(2966383-2966431)
chr7 (11-59)||(12710435-12710483)
chr7 (61-109)||(20907038-20907086)
[»] chr4 (14 HSPs)
chr4 (8-321)||(8046420-8046744)
chr4 (5-128)||(15407485-15407608)
chr4 (42-144)||(14486052-14486154)
chr4 (93-233)||(11847397-11847537)
chr4 (182-245)||(14485975-14486037)
chr4 (8-145)||(53483022-53483171)
chr4 (52-154)||(16147412-16147514)
chr4 (115-227)||(8834185-8834297)
chr4 (61-178)||(27905613-27905729)
chr4 (83-175)||(15244566-15244658)
chr4 (275-342)||(18212557-18212623)
chr4 (53-225)||(13887086-13887258)
chr4 (53-225)||(13887943-13888115)
chr4 (83-227)||(15307415-15307563)
[»] scaffold1773 (1 HSPs)
scaffold1773 (52-321)||(324-592)
[»] scaffold0247 (1 HSPs)
scaffold0247 (8-227)||(10610-10829)
[»] scaffold0029 (4 HSPs)
scaffold0029 (114-318)||(111081-111284)
scaffold0029 (52-150)||(91783-91881)
scaffold0029 (52-150)||(97509-97607)
scaffold0029 (11-59)||(111330-111378)
[»] scaffold0154 (1 HSPs)
scaffold0154 (43-232)||(30194-30383)
[»] scaffold0053 (2 HSPs)
scaffold0053 (83-340)||(81826-82082)
scaffold0053 (52-154)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (26-342)||(116052-116366)
scaffold0004 (39-227)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (39-342)||(65290-65592)
scaffold0028 (259-321)||(1274-1336)
[»] chr8 (8 HSPs)
chr8 (52-260)||(23865818-23866026)
chr8 (5-128)||(14057148-14057271)
chr8 (5-128)||(25111385-25111508)
chr8 (50-342)||(18613409-18613697)
chr8 (52-178)||(24321252-24321376)
chr8 (58-227)||(21931018-21931187)
chr8 (8-59)||(17054009-17054060)
chr8 (11-59)||(23866030-23866078)
[»] scaffold0117 (1 HSPs)
scaffold0117 (11-259)||(9167-9425)
[»] scaffold0461 (2 HSPs)
scaffold0461 (5-177)||(581-752)
scaffold0461 (93-177)||(7605-7688)
[»] scaffold0249 (1 HSPs)
scaffold0249 (233-346)||(7517-7629)
[»] chr5 (18 HSPs)
chr5 (8-318)||(23527777-23528099)
chr5 (50-214)||(18408521-18408685)
chr5 (52-132)||(19236294-19236374)
chr5 (44-103)||(22439310-22439369)
chr5 (71-178)||(22460506-22460611)
chr5 (70-178)||(34829432-34829539)
chr5 (52-178)||(22467130-22467254)
chr5 (79-170)||(20781102-20781192)
chr5 (275-342)||(23112480-23112546)
chr5 (8-58)||(20819639-20819689)
chr5 (8-58)||(20826739-20826789)
chr5 (197-229)||(20819456-20819488)
chr5 (197-229)||(20826556-20826588)
chr5 (52-132)||(28889978-28890058)
chr5 (52-132)||(28896682-28896762)
chr5 (52-132)||(28909930-28910010)
chr5 (52-132)||(28931622-28931702)
chr5 (52-132)||(28946325-28946405)
[»] scaffold0139 (1 HSPs)
scaffold0139 (4-342)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-144)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (83-227)||(1117-1261)
[»] chr1 (11 HSPs)
chr1 (5-177)||(18712098-18712270)
chr1 (52-192)||(41111214-41111354)
chr1 (52-178)||(21710167-21710292)
chr1 (93-244)||(19961472-19961622)
chr1 (56-227)||(22030333-22030504)
chr1 (52-178)||(20851714-20851838)
chr1 (52-178)||(21705625-21705749)
chr1 (52-145)||(20858341-20858434)
chr1 (114-342)||(11157328-11157554)
chr1 (10-59)||(41111358-41111407)
chr1 (275-335)||(20438224-20438283)
[»] scaffold0124 (1 HSPs)
scaffold0124 (5-154)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (18-177)||(15475-15633)
scaffold0235 (18-154)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (114-321)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (83-342)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (11-128)||(6907-7024)
[»] scaffold0077 (1 HSPs)
scaffold0077 (14-142)||(4153-4281)
[»] scaffold0222 (1 HSPs)
scaffold0222 (50-214)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (52-178)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (42-342)||(102489-102787)
[»] scaffold0476 (1 HSPs)
scaffold0476 (50-154)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (50-201)||(17492-17643)
[»] scaffold0001 (2 HSPs)
scaffold0001 (93-244)||(493650-493800)
scaffold0001 (83-227)||(525062-525205)
[»] scaffold0261 (1 HSPs)
scaffold0261 (79-244)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (58-227)||(121200-121369)
scaffold0031 (58-227)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (120-227)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (61-244)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (5-128)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (114-219)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (93-244)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (43-178)||(3831-3966)
[»] scaffold0453 (1 HSPs)
scaffold0453 (115-244)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (93-154)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (183-227)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (275-342)||(1207-1273)
[»] scaffold0023 (2 HSPs)
scaffold0023 (52-109)||(134867-134924)
scaffold0023 (114-178)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (11-59)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (183-227)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (11-59)||(49597-49645)


Alignment Details
Target: scaffold0634 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 346
Target Start/End: Complemental strand, 3156 - 2854
Alignment:
Q  43 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 142  Q
    ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  143 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatccta 242  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatccca 2957  T
Q  243 ctagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  2956 ctagaacaagccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatg 2858  T
Q  343 tatg 346  Q
    ||||    
T  2857 tatg 2854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 114 - 346
Target Start/End: Original strand, 12534 - 12765
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 313  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaagaaatcaagtg 12733  T
Q  314 aatatataatttattgaatgaaattgatgtatg 346  Q
    ||| |||||  ||||||||||||||||||||||    
T  12734 aatgtataa-ctattgaatgaaattgatgtatg 12765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 12437 - 12543
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctca-----------agcgaaccctaagcgagcagaacccagaccttctgtaagccggtc 96  Q
    ||||||||||||||||| |||||||||||| |||||||||||||           |||||||| ||||||||| |||||||||||| |||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  97 gcttaag 103  Q
    |||||||    
T  12537 gcttaag 12543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 26583313 - 26582992
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 199  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  200 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 299  Q
    ||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  26583113 ttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgag 26583014  T
Q  300 tatgaaatcaagtgaatatata 321  Q
    ||||||||| ||||||||||||    
T  26583013 tatgaaatcgagtgaatatata 26582992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 23168954 - 23169160
Alignment:
Q  115 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 213  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 313  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  314 aatatata 321  Q
    ||| ||||    
T  23169153 aatgtata 23169160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 23580211 - 23580417
Alignment:
Q  115 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 213  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 313  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  314 aatatata 321  Q
    ||| ||||    
T  23580410 aatgtata 23580417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 23089594 - 23089779
Alignment:
Q  42 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 141  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  142 gcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    ||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089694 gccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 342
Target Start/End: Complemental strand, 23063127 - 23062869
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 181  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  182 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtg 280  Q
    |||||||||  |||||||||| || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  ||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtg 23062930  T
Q  281 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    || ||| ||||||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062929 aa-tttggagatgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 23101994 - 23102207
Alignment:
Q  14 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 113  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||||| |||||||||||||||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttg 212  Q
    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttg 23102192  T
Q  213 tataacccttgtata 227  Q
    |||||||||| ||||    
T  23102193 tataacccttatata 23102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 148  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  149 tt 150  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  39 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 137  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  138 gtcagcctctttttgaa 154  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 191  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  192 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  82 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 180  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| |||||||||||||  |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaatttta-cttcgtgcactaggggatcct 24660923  T
Q  181 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
     ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 29281470 - 29281368
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  29281470 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttct 29281371  T
Q  152 gaa 154  Q
    |||    
T  29281370 gaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 25181501 - 25181606
Alignment:
Q  71 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 170  Q
    |||||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | |||||||||||||    
T  25181501 gaacccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcac 25181598  T
Q  171 gaggggac 178  Q
     |||||||    
T  25181599 taggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 103  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||||| | |||||||  ||||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 10050 - 9957
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10050 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 342
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  114 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 211  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  212 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 311  Q
    |||||||| || ||||     |  |||||||| | ||||   |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatataca---ctaaatcctaccaaaacact-tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  312 tgaatatataatttattgaatgaaattgatg 342  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  82 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  82 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 29614738 - 29615053
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 199  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  200 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 299  Q
    ||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||    
T  29614935 ttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgag 29615034  T
Q  300 tatgaaatcaagtgaatat 318  Q
    ||||||| |||||||||||    
T  29615035 tatgaaaacaagtgaatat 29615053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 342
Target Start/End: Complemental strand, 25396671 - 25396369
Alignment:
Q  39 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 138  Q
    |||||||| || ||||||||| | ||||||| ||||||  ||  |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||    
T  25396671 agaagttcacttaagcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttag 25396572  T
Q  139 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 237  Q
    ||| || ||||||||||| | |||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||    
T  25396571 tcaaccactttttgaattat-gcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaa 25396474  T
Q  238 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 337  Q
    |||||||  ||||   |||| ||||||||||||||  |||||||||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |    
T  25396473 tcctactgaaacacattggtaatcgaattggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaact 25396374  T
Q  338 tgatg 342  Q
    |||||    
T  25396373 tgatg 25396369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 18799932 - 18799754
Alignment:
Q  44 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 143  Q
    |||||| ||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  144 ctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 222  Q
    | |||||||||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799832 cactttttgaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 21565751 - 21565936
Alignment:
Q  42 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 141  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  142 gcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    ||| |||||||||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565851 gccactttttgaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 19877870 - 19877730
Alignment:
Q  52 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  19877870 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 19877772  T
Q  151 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877771 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 19300308 - 19300509
Alignment:
Q  42 agttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtc 140  Q
    ||||||||| |||||||| | ||||||| |||| ||| || | ||||| || ||||||||||| || ||| |  ||||||||||||  ||||||||||||    
T  19300308 agttcgctcgagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtc 19300406  T
Q  141 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 239  Q
    ||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | || |||||| |||| ||||||||||||||||||||| |||| ||||    
T  19300407 agcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgtataggcatca-aatc 19300504  T
Q  240 ctact 244  Q
    |||||    
T  19300505 ctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 19786529 - 19786650
Alignment:
Q  71 gaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 169  Q
    ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  ||||    
T  19786529 gaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgca 19786627  T
Q  170 cgaggggacttcttgagcattct 192  Q
     ||||||||||||||||| ||||    
T  19786628 tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 19471914 - 19472082
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 149  Q
    ||||||| || | ||||||| ||||||  || |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||    
T  19471914 caagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccacttt 19472012  T
Q  150 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 219  Q
    ||||||||| ||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19472013 ttgaatttt-gcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 103  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 20008529 - 20008622
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008529 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    |||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  10 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 98  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  99 ttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||| | |||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  10 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 98  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  99 ttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||| | |||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 19786455 - 19786506
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 19877923 - 19877874
Alignment:
Q  10 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19877874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  114 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 177  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 407 - 241
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 281  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 7552 - 7386
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 281  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 92  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 92  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 344
Target Start/End: Original strand, 41455741 - 41456034
Alignment:
Q  52 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| |||     
T  41455741 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttc 41455840  T
Q  151 tgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaaca 250  Q
    |||| | |||||| ||||| ||||||||||| ||||| ||||  ||  |   ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  41455841 tgaactgttgcttagtgcatgaggggacttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaaca 41455940  T
Q  251 agctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgta 344  Q
    ||||||  ||||||||| ||| ||||||| ||| || ||||| |||||||| ||| || ||||||||||| ||  ||||||||||||||||||||    
T  41455941 agctggcaatcgaattgattggtgttagtaaatgttggagataattgagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgta 41456034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 50 - 346
Target Start/End: Complemental strand, 18914590 - 18914295
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 148  Q
    |||||||||| | ||||||| ||||||  ||  ||| ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| |||    
T  18914590 caagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactt 18914492  T
Q  149 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 247  Q
    || |||||||||| |||||||  |||||| | | ||||||||   | ||| |||| |  ||||||||||||| || ||||   | || |||||||||| |    
T  18914491 tt-gaatttttgcctcgtgcattaggggatccttttgagcatataataatatttcttccaacttgtataacctttatatataca-cataatcctactaaa 18914394  T
Q  248 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatg 346  Q
    |||  ||  |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  18914393 acactctattgatggaattagttgatgttagtgaattttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatg 18914295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  14 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 113  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  44 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 143  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  144 ctctttttgaa 154  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 245
Target Start/End: Original strand, 13324381 - 13324562
Alignment:
Q  63 agcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 162  Q
    |||||||| |||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  163 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 245  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcag-----------aacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| | |           ||||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 144  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 212  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  213 tataacccttgtataggtatcagaatcctacta 245  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 212  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  213 tataacccttgtataggtatcagaatcctacta 245  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 14865319 - 14865216
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | |||||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| |||     
T  14865319 agcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttc 14865220  T
Q  151 tgaa 154  Q
    ||||    
T  14865219 tgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 10390034 - 10390083
Alignment:
Q  9 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 58  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10390083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 10415123 - 10415172
Alignment:
Q  9 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 58  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10415172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 10421793 - 10421842
Alignment:
Q  9 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 58  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10421842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 12034007 - 12034072
Alignment:
Q  44 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 109  Q
    |||||| |||||| || ||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  12034007 ttcgcttaagcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 52 - 317
Target Start/End: Complemental strand, 13743121 - 13742860
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||||| |||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |    
T  13743121 agcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttct 13743025  T
Q  152 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 251  Q
    ||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | |||||||| |||||| |    
T  13743024 gaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacga 13742925  T
Q  252 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 317  Q
    || |  ||| | |||  ||| ||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  13742924 gccgaggattggattaattggtgttagt-aatgttggaggtgattgtgtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 16676845 - 16676623
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  105 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 203  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  204 tttaacttgtataacccttgtata 227  Q
    || |||||||||||||||| ||||    
T  16676646 ttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 17651081 - 17650859
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  105 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 203  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  204 tttaacttgtataacccttgtata 227  Q
    || |||||||||||||||| ||||    
T  17650882 ttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 13123506 - 13123822
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 199  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 13123704  T
Q  200 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 299  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  13123705 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 13123804  T
Q  300 tatgaaatcaagtgaata 317  Q
    |||| ||  |||||||||    
T  13123805 tatgtaaataagtgaata 13123822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 317
Target Start/End: Original strand, 12710496 - 12710751
Alignment:
Q  61 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 160  Q
    ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | ||     
T  12710496 taagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactatta 12710594  T
Q  161 cttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgat 260  Q
    ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || ||||||  |||| |||| || ||||||| ||||||    
T  12710595 cttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgat 12710694  T
Q  261 cgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 317  Q
     | |||| ||| | ||||| ||| || | | |||||| ||||| ||  |||||||||    
T  12710695 tggattgattggtattagtaaatgttggtgttgattgtgtatgtaaataagtgaata 12710751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 321
Target Start/End: Complemental strand, 46625403 - 46625166
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 181  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  182 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 281  Q
    ||||||||| ||||||||||| || ||||||||| ||||| ||||| | | |  |||||||||  ||||   |||| || |||||||||||   ||||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtga 46625206  T
Q  282 atttttgagatgattgagtatgaaatcaagtgaatatata 321  Q
    |||||  | |||||||||||||||| ||| ||||||||||    
T  46625205 attttgaatatgattgagtatgaaaccaaatgaatatata 46625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 342
Target Start/End: Complemental strand, 13678906 - 13678649
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 180  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  181 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 280  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 13678710  T
Q  281 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678709 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  44 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 142  Q
    |||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  143 cctctttttgaa 154  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 128  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 143  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  62 aagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 160  Q
    |||||||| |||||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  161 cttcgtgcacgagggga 177  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 16090559 - 16090457
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16090559 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16090460  T
Q  152 gaa 154  Q
    |||    
T  16090459 gaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  82 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 21231554 - 21231643
Alignment:
Q  39 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 128  Q
    ||||||||||||||||||||| | ||||||| ||||||  || |||||| ||| |||||||||||  ||||    |||||||||||||||    
T  21231554 agaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 2464838 - 2464758
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  2464838 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 3858007 - 3858087
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  3858007 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3857953 - 3858003
Alignment:
Q  10 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaacc 59  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaacc 3858003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 18607339 - 18607285
Alignment:
Q  288 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 18607285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 29181690 - 29181780
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 142  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||| || ||||  ||||||||    
T  29181690 agcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 2966431 - 2966383
Alignment:
Q  61 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 109  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  2966431 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 12710435 - 12710483
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    |||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 12710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 20907038 - 20907086
Alignment:
Q  61 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 109  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  20907038 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 8046420 - 8046744
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtc 96  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  97 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 196  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataa 8046619  T
Q  197 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 296  Q
      |   |||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||    
T  8046620 cttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgatt 8046719  T
Q  297 gagtatgaaatcaagtgaatatata 321  Q
    | |||||||| ||||||||||||||    
T  8046720 gtgtatgaaaacaagtgaatatata 8046744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| ||||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  105 gaactatctgtcgcttaagcgaag 128  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  42 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 141  Q
    |||||||||||||||||| | ||||||| ||||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  142 gcc 144  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 11847537 - 11847397
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 191  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||     
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtattt 11847439  T
Q  192 taaaatgtttcctttaacttgtataacccttgtataggtatc 233  Q
      || |||||| | || |||||||||| ||||||||||||||    
T  11847438 gtaagtgtttcttctagcttgtataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  182 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 245  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 16147412 - 16147514
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16147412 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16147511  T
Q  152 gaa 154  Q
    |||    
T  16147512 gaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 8834297 - 8834185
Alignment:
Q  115 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    ||||||||||||||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || |||||||    
T  8834297 tcgcttaagcgaagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgt 8834199  T
Q  214 ataacccttgtata 227  Q
    |||||| |||||||    
T  8834198 ataacctttgtata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  61 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 160  Q
    |||||||||| |||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  161 cttcgtgcacgaggggac 178  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 175  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 18212623 - 18212557
Alignment:
Q  275 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 18212557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 13887258 - 13887086
Alignment:
Q  53 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 152  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13887258 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13887160  T
Q  153 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 225  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887159 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 13888115 - 13887943
Alignment:
Q  53 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 152  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13888115 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13888017  T
Q  153 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 225  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13888016 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 15307563 - 15307415
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 181  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | |     
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctt 15307464  T
Q  182 ttgagcattctaaaatgtttccttt---aacttgtataacccttgtata 227  Q
    | ||||||| ||||||||||  |||   ||||||||||||| |||||||    
T  15307463 tcgagcattttaaaatgttttttttttcaacttgtataacctttgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 321
Target Start/End: Complemental strand, 592 - 324
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |    
T  592 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttct 494  T
Q  152 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 251  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| | |||||||| ||||||||    
T  493 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaa 394  T
Q  252 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 321  Q
    ||  ||||| | |||| ||| ||||||| ||| || |||||||| | |||||||| ||||||||||||||    
T  393 gccagtgattggattgattggtgttagtaaatgttggagatgatggtgtatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 10829 - 10610
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaa 107  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  108 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaaatgtttccttt 206  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  || ||||  | |||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaacatgtccctttt 10631  T
Q  207 aacttgtataacccttgtata 227  Q
    |||||||||||||||| ||||    
T  10630 aacttgtataacccttatata 10610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 111284 - 111081
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  214 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 313  Q
    |||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||||| ||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatgaaaacaagtg 111086  T
Q  314 aatat 318  Q
    |||||    
T  111085 aatat 111081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 91783 - 91881
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91783 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 97509 - 97607
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97509 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 111378 - 111330
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 30383 - 30194
Alignment:
Q  43 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 142  Q
    |||| |||||||||||| | |||||||  |||| | || |||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||    
T  30383 gttcactcaagcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcag 30284  T
Q  143 cctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 232  Q
    || |||| |||||||| ||||||||||| |||||||  | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30283 ccactttctgaatttt-gcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 340
Target Start/End: Original strand, 81826 - 82082
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 181  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  182 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 281  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtga 82023  T
Q  282 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattga 340  Q
    ||||| || ||| |||||||||||| |||||||||||||| | | ||||||||| ||||    
T  82024 attttggatatgtttgagtatgaaaccaagtgaatatatattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 80072 - 80174
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  80072 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 80171  T
Q  152 gaa 154  Q
    |||    
T  80172 gaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 342
Target Start/End: Complemental strand, 116366 - 116052
Alignment:
Q  26 ttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 125  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||  || ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  126 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttg 223  Q
    ||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | | ||||| ||| ||||||||||| || ||| ||||||||| ||     
T  116266 aagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataaccttta 116169  T
Q  224 tataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataat 323  Q
    ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  116168 tatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtgaa-ttttgagatgattgagtatgaaatcaagtgaacatatact 116071  T
Q  324 ttattgaatgaaattgatg 342  Q
     | ||||||||| ||||||    
T  116070 atgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 129204 - 129393
Alignment:
Q  39 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 138  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  139 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 342
Target Start/End: Complemental strand, 65592 - 65290
Alignment:
Q  39 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 138  Q
    ||||||||||| || |||||| | ||||||| ||||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  139 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 237  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||  || |||| | | | |||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaa 65395  T
Q  238 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 337  Q
    |||||||| ||||   |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |    
T  65394 tcctactaaaacacattggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaact 65295  T
Q  338 tgatg 342  Q
    |||||    
T  65294 tgatg 65290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  259 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 321  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 260
Target Start/End: Complemental strand, 23866026 - 23865818
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |    
T  23866026 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttct 23865927  T
Q  152 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 251  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||    
T  23865926 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaa 23865827  T
Q  252 gctggtgat 260  Q
    || ||||||    
T  23865826 gccggtgat 23865818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||||| | ||||||| |||||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  105 gaactatctgtcgcttaagcgaag 128  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  105 gaactatctgtcgcttaagcgaag 128  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 18613697 - 18613409
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 148  Q
    |||||||||| | ||||||| ||||||  ||  ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |    
T  18613697 caagcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-t 18613600  T
Q  149 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 247  Q
    ||||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || ||||||||||||| || ||||   | | |||||||||| ||    
T  18613599 tttgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-ga 18613503  T
Q  248 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    |  |  |||| |||||||| |||||  |||||||| ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613502 aacacttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 24321252 - 24321376
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  24321252 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 24321350  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||| ||| |||||||    
T  24321351 gaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 21931187 - 21931018
Alignment:
Q  58 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatt 156  Q
    |||| |||||||||||| |  ||  |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  |    
T  21931187 cccttagcgagcagaacaccaactctctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--t 21931090  T
Q  157 tttgcttcgtgcacgagggga--cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    |||||||| | ||| |||| |  | ||| ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931089 tttgcttcctccactagggaatccatct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17054060 - 17054009
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 17054009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 23866078 - 23866030
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    |||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 23866030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 9167 - 9425
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 199  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||  ||  |    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaactt 9365  T
Q  200 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtga 259  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||    
T  9366 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtga 9425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 581 - 752
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | |||||||  |||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  105 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 177  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 177  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 7517 - 7629
Alignment:
Q  233 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 332  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  333 gaaattgatgtatg 346  Q
    ||||||||||||||    
T  7616 gaaattgatgtatg 7629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 23528099 - 23527777
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 95  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  96 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaa 195  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||  |    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttcttta 23527901  T
Q  196 atgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatga 294  Q
    |  |   |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || ||||||     
T  23527900 acttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgt 23527801  T
Q  295 ttgagtatgaaatcaagtgaatat 318  Q
    ||| || ||||| |||||||||||    
T  23527800 ttgggtgtgaaagcaagtgaatat 23527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 18408521 - 18408685
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctt 148  Q
    |||||||||| | ||||||| ||||||  || ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||    
T  18408521 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactt 18408619  T
Q  149 tttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 214  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408620 tttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 19236374 - 19236294
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236374 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  44 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 103  Q
    |||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 22460611 - 22460506
Alignment:
Q  71 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 170  Q
    |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| |||    
T  22460611 gaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacac 22460514  T
Q  171 gaggggac 178  Q
     |||||||    
T  22460513 taggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 34829539 - 34829432
Alignment:
Q  70 agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 169  Q
    |||||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||    
T  34829539 agaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgca 34829441  T
Q  170 cgaggggac 178  Q
    | |||||||    
T  34829440 ctaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 22467254 - 22467130
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |    
T  22467254 agcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttct 22467156  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||| ||| |||||||    
T  22467155 gaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  79 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 170  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  275 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 20819689 - 20819639
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 58  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20819639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 20826789 - 20826739
Alignment:
Q  8 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 58  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  197 tgtttcctttaacttgtataacccttgtatagg 229  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  197 tgtttcctttaacttgtataacccttgtatagg 229  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 28889978 - 28890058
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28889978 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 28896682 - 28896762
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28896682 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 28909930 - 28910010
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28909930 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 28931622 - 28931702
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28931622 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 28946325 - 28946405
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 132  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28946325 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 342
Target Start/End: Original strand, 15521 - 15856
Alignment:
Q  4 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 103  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||||| | ||||| |  |||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  104 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 201  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  202 cctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 301  Q
    | || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||| ||| ||||||||||||||    
T  15718 ctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagta 15815  T
Q  302 tgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    ||||| |||||||| ||||| | | ||||||||| ||||||    
T  15816 tgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 99  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  100 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 144  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 181  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  182 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  105 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 177  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 41111354 - 41111214
Alignment:
Q  52 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 150  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  41111354 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 41111256  T
Q  151 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 192  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111255 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    |||||||| ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 191  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  192 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
    | |  |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 22030333 - 22030504
Alignment:
Q  56 aaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaat 155  Q
    |||||| |||||||||||| |  ||  |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||    
T  22030333 aacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aat 22030431  T
Q  156 ttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    ||||||||| ||||| |||  | | | |||||||||||| |||||||| || ||||||||||||| |||||||    
T  22030432 ttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacctttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 20851714 - 20851838
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  20851714 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 20851812  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||| ||| |||||||    
T  20851813 gaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 21705749 - 21705625
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  21705749 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 21705651  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||| ||| |||||||    
T  21705650 gaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 20858341 - 20858434
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 145  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858341 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 342
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  114 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 211  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  212 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 311  Q
    ||||||||||| ||||   | |  |||||||||  ||||   |||| |||||||| || ||  |||||||| |||  |||||||||||||||||| ||||    
T  11157456 gtataacccttatatataca-ctaaatcctactgaaacactttggtaatcgaattagtcgagtttagtgaa-tttgaagatgattgagtatgaaaccaag 11157359  T
Q  312 tgaatatataatttattgaatgaaattgatg 342  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41111407 - 41111358
Alignment:
Q  10 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 41111358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 20438224 - 20438283
Alignment:
Q  275 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaa 335  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | |||||||||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaa 20438283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | ||||||| |||||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  105 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 154  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  18 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 117  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||| ||||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  118 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 177  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  18 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 117  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||  ||||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  118 cttaagcgaag-tgagccttagtcagcctctttttgaa 154  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 1813 - 1607
Alignment:
Q  114 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 211  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  212 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 311  Q
    |||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||||    
T  1715 gtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaaccaag 1617  T
Q  312 tgaatatata 321  Q
    ||||||||||    
T  1616 tgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 342
Target Start/End: Complemental strand, 799 - 542
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 180  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  181 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 280  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 603  T
Q  281 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  602 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaacta 110  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  111 tctgtcgcttaagcgaag 128  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  14 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 113  Q
    |||||||||||  ||||||||||  |  |||||||||||||||||| ||| |||||||||||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  114 gtcgcttaagcgaagtgagccttagtcag 142  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 16247 - 16083
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 148  Q
    |||||||||| | ||||||| ||||||  || |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||    
T  16247 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactt 16149  T
Q  149 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgta 214  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  16148 tttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 4253 - 4377
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 151  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |    
T  4253 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttct 4351  T
Q  152 gaatttttgcttcgtgcacgaggggac 178  Q
    ||| | ||||||||||||| |||||||    
T  4352 gaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 342
Target Start/End: Original strand, 102489 - 102787
Alignment:
Q  42 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 140  Q
    |||||||||||||||||| | ||||||| ||||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  141 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 239  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| ||||||||| || ||||   | | || ||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtc 102685  T
Q  240 ctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattg 339  Q
    ||||   ||||   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||    
T  102686 ctacagaaacaccttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttg 102784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 3871 - 3975
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 149  Q
    |||||||||| |||  |||||||||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| ||||    
T  3871 caagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccacttt 3970  T
Q  150 ttgaa 154  Q
    |||||    
T  3971 ttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 17643 - 17492
Alignment:
Q  50 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 149  Q
    |||||||||  | |||||||  |||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| ||||    
T  17643 caagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccacttt 17544  T
Q  150 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 201  Q
     |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17543 ctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 191  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  192 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 525205 - 525062
Alignment:
Q  83 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 180  Q
    |||||||| |||||||||||| |||| | |  ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | |    
T  525205 tctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccat 525108  T
Q  181 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    || ||||||||| ||||||||| || ||||||||||||| |||||||    
T  525107 ct-gagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  79 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 177  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  178 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
    | | |||||  || | || |||||| |||| |||||||||||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 121369 - 121200
Alignment:
Q  58 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 157  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  121369 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 121270  T
Q  158 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  121269 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 132246 - 132077
Alignment:
Q  58 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 157  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  132246 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 132147  T
Q  158 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  132146 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  120 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 218  Q
    ||||||||| | | ||||||||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaatttt-gcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  219 ccttgtata 227  Q
    | |||||||    
T  19158 ctttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 72747 - 72565
Alignment:
Q  61 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 160  Q
    |||||||||| |||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  161 cttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
    |||||||||  |||||| | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72648 cttcgtgcattaggggaccctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  5 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 104  Q
    ||||| || ||| ||||||| |||  |||||| | |||||||||||||||||||  | ||||||| ||||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  105 gaactatctgtcgcttaagcgaag 128  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 212  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  213 tataacc 219  Q
    |||||||    
T  51558 tataacc 51552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 11631 - 11782
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-tt 190  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | ||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattt 11729  T
Q  191 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 244  Q
     | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  11730 tttaagtttttcttttagcttgtataacccttgtataggcatca-aatcctact 11782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  43 gttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 141  Q
    ||||||||||||||||| | ||||||| || |||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  142 gcctctttttgaatttttgcttcgtgcacgaggggac 178  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 11196 - 11324
Alignment:
Q  115 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 213  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgt 11294  T
Q  214 ataacccttgtataggtatcagaatcctact 244  Q
    ||||| |||||||||| |||| |||||||||    
T  11295 ataactcttgtataggcatca-aatcctact 11324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  93 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 154  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  183 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  275 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 342  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 134924 - 134867
Alignment:
Q  52 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 109  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  134924 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  114 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 178  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 1343 - 1391
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaacc 1391  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 3328 - 3372
Alignment:
Q  183 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 227  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 tgagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 49645 - 49597
Alignment:
Q  11 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 59  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaacc 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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