View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17785_low_8 (Length: 329)
Name: NF17785_low_8
Description: NF17785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17785_low_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 6156085 - 6156413
Alignment:
| Q |
1 |
aatttaaaaggaatcaccaacatgcaaatggtaagacatatatacaaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgatta |
100 |
Q |
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| T |
6156085 |
aatttaaaagggatcaccaacatgcaaatggcaagacatatatacaaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgatta |
6156184 |
T |
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| Q |
101 |
tctagtgctctacgtccagtgatcaactctagcaaaaccataccaaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6156185 |
tctagtgctctacgtccagtgatcaactctagcaaaaccataccaaaactatagatatcagattgtcgggttaatttgccagtcttcgcatattctggtg |
6156284 |
T |
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| Q |
201 |
cacagtagccttcagtacccatcactctggtttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaa |
300 |
Q |
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| T |
6156285 |
cacagtagccttcagtacccatcactctggtttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcggacagttttgcgttgaa |
6156384 |
T |
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| Q |
301 |
gtcgttgtccaataaaatgttggcagatt |
329 |
Q |
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| T |
6156385 |
gtcgttgtccaataaaatgttggcagatt |
6156413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 329
Target Start/End: Original strand, 54031801 - 54032089
Alignment:
| Q |
41 |
tatacaaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgattatctagtgctctacgtccagtgatcaactctagcaaaacca |
140 |
Q |
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| T |
54031801 |
tatacgaactaaatatttacccatgaaactaagttttgctctcctggttttttactagcatctattgcccttcgtccagtaatcaactccaacaaaacca |
54031900 |
T |
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| Q |
141 |
taccaaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtgcacagtagccttcagtacccatcactctggtttcaacatg |
240 |
Q |
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| T |
54031901 |
caccaaagctgtagatatcagacttaagagttaatttgccactcatcgcatattctggcgcgcagtagccatatgtacccatcactctcgttgaaacatg |
54032000 |
T |
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| Q |
241 |
agtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagatt |
329 |
Q |
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| T |
54032001 |
ggtgttgtctccaacaggtcctagcttagcaagcccaaaatctgacagttttgggctgaagtcgctgtctaataagatgtttgcagatt |
54032089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 321
Target Start/End: Original strand, 56020430 - 56020706
Alignment:
| Q |
45 |
caaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgattatctagtgctctacgtccagtgatcaactctagcaaaaccatacc |
144 |
Q |
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|||||||||| |||||||||| | ||||| | |||| |||||| |||| | |||| || ||||||||||| || |||| || |||||||||| ||| |
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| T |
56020430 |
caaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacgtccggttatcagttccagcaaaaccacacc |
56020529 |
T |
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| Q |
145 |
aaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtgcacagtagccttcagtacccatcactctggtttcaacatgagtg |
244 |
Q |
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|||||| |||||||| |||||| |||||||||||||||| | ||||||||| |||| || |||||||| ||||||||||||| |||| |||||| ||| |
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| T |
56020530 |
aaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcgcaatagccttcggtacccatcactcgggttgaaacatgtgtg |
56020629 |
T |
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| Q |
245 |
ttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgtt |
321 |
Q |
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| T |
56020630 |
tcgtctccaaccggtccaagtttagcaagcccgaaatctgacagttttgcactgaagtcatgttccagtaaaatgtt |
56020706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 21139474 - 21139537
Alignment:
| Q |
266 |
tttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagatt |
329 |
Q |
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| T |
21139474 |
tttgctagtccaaaatcagagagttttgcattgaaatctttgtccaataagatgttggaagatt |
21139537 |
T |
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