View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17786_high_4 (Length: 435)
Name: NF17786_high_4
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 43363515 - 43363914
Alignment:
| Q |
21 |
atggctatcctgtcctattcataaaaagaatcccttatcaaaccttcccacaaatttcagtttcagaagcttcagcatattagtggcctatatatacagt |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
43363515 |
atggctatcctgtcctattcataaacagaatcccttatcaaaccttcccacaaatttcagtttcaaaagcttcggcatattagtggcctatatatacagt |
43363614 |
T |
|
| Q |
121 |
tgccacaagcctacaatctacattttgaagcagcttctcatacaaaatctaataaactatatacaaaggcttaattttcagtactgtttgaagatcttat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43363615 |
tgccacaagcctacaatctacattttgaagcagcttctcatacaaaatctaataaactatatacaaaggcttaattttcagtactgtttgaagatcttat |
43363714 |
T |
|
| Q |
221 |
tcttagcagtgcaagaagagggaaaagcaagcagagagaagttgctagaattcgaacatctaatctgagaagaatacttgcacttcagcttggtcagtac |
320 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43363715 |
tcttatcagtgcaagaagagggaaaagcaagcagggagaagttgctagaattcgaacatctaatctgagaagaatacttgtacttcagcttggtcagtac |
43363814 |
T |
|
| Q |
321 |
ccattagaagggggagcgaatcaatattagttcctttgagctgaacctgctttctataattgtccaaatcataatctaattcagaccactcccgttcttc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43363815 |
ccattagaagggggagcgaatcaatattagttcctttgagctgaacctgctttctataattgtccaaatcataatctaattcagaccactcccgttcttc |
43363914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University