View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_high_5 (Length: 415)
Name: NF17786_high_5
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 197 - 398
Target Start/End: Original strand, 39527527 - 39527728
Alignment:
| Q |
197 |
gctgaaatcaatgtccgaccacagggagctcaaaatcgattagagtgagattcataatcgatagtaatgtttctagaaaaacttgtaatcaattaattct |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527527 |
gctgaaatcaatgtccgaccacagggagctcaaaatcgattagagtgagattcataatcgatagtaatgtttctagaaaaacttgtaatcaattaattct |
39527626 |
T |
|
| Q |
297 |
gcctatataatcaatcaattgctaacatattgtgtgctttatgcactatacacgttccatgcatacgtaaatgaaagctgctgcttcagacaaccttata |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39527627 |
gcctatataatcaatcaattgctaacatattgtgtgctttatgcactatacacgttccatgcatatgtaaatgaaagctgctgcttcagacaaccttata |
39527726 |
T |
|
| Q |
397 |
ag |
398 |
Q |
| |
|
|| |
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|
| T |
39527727 |
ag |
39527728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39527273 - 39527461
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
39527273 |
caaccattcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaatcttccactgtttgtcttccatcactagtttcaatgttttgttttacatc |
39527372 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatccaaagaaacaagtctaagaagcaaagttacatattttaacaccaaagaaacaacttaattgattat |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527373 |
tccatattgtgaagccaccaatccaaagaaacaagtctaagaagcaaagttacatattttaacaccaaagaaacaacttaattgattat |
39527461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39368547 - 39368424
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
39368547 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaatcttccactgtttgtcttccatcactggtttcaatgttttgttttacatc |
39368448 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcc |
124 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
39368447 |
tccatattgtgaagtcaccaatcc |
39368424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39535746 - 39535869
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
39535746 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaatcttccactgtttgtcttccatcactggtttcaatgttttgttttacatc |
39535845 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcc |
124 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
39535846 |
tccatattgtgaagtcaccaatcc |
39535869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39355802 - 39355678
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
39355802 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcaaaaattcttccactgtttgtcttccatcactggtttcaatgttttgttttacatc |
39355703 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcca |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
39355702 |
tccatattgtgaagccaccaatcca |
39355678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39545108 - 39545232
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||| ||| |||||||||||||| ||| |
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| T |
39545108 |
caaccattcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaatctttcactgtttggcttctatcactggtttcaatgttttgttttaaatc |
39545207 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcca |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
39545208 |
tccatattgtgaagccaccaatcca |
39545232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39561940 - 39562064
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||| ||| |||||| || ||| |||| |
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| T |
39561940 |
caaccactcctagaaaatcatgcttgaaatcaaagtagtttttcagaaaaccttctactgtttgtcttccatcactggtttcaatgttgtgcttttcatc |
39562039 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcca |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
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|
| T |
39562040 |
tccatattgtgaaaccaccaatcca |
39562064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 176 - 389
Target Start/End: Original strand, 39514616 - 39514826
Alignment:
| Q |
176 |
acttaattgattatgggcaatgctgaaatcaatgtccgaccacagggagctcaaaatcgattagagtgagattcataatcgatagtaatgtttctagaaa |
275 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| | ||||| | ||||||| |||||||||||||||||| ||||||| ||| ||| |
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|
| T |
39514616 |
acttaattgattattggcaatgctgaaatcaatgtcaacccacatgaagctcgtattcgattattgtgagattcataatcgat--taatgttactacaaa |
39514713 |
T |
|
| Q |
276 |
aa-cttgtaatcaattaattctgcctatataatcaatcaattgctaacatattgtgtgctttatgcactatacacgttccatgcatacgtaaatgaaagc |
374 |
Q |
| |
|
|| ||| |||||||| || | ||||||||||||| || ||||| ||||| |||||||| ||||||| |||| ||||||||| | ||||||||| ||| || |
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|
| T |
39514714 |
aaacttctaatcaataaagt-tgcctatataatcgattaattggtaacaaattgtgtggtttatgcgctatgcacgttccacgaatacgtaaa-gaacgc |
39514811 |
T |
|
| Q |
375 |
tgctgcttcagacaa |
389 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39514812 |
tgctgcttcagacaa |
39514826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39340994 - 39340870
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttttaaatgttttgttttacatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||| ||| | |||||| ||||| ||||||||| || || |||||||| ||||| ||| |
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|
| T |
39340994 |
caaccactcctagaaaatcaggcttgaaaccaaagtagtttctcaaaaattcttccacggtttggcttccatcattggattcaatgtttttttttaaatc |
39340895 |
T |
|
| Q |
101 |
tccatattgtgaagccaccaatcca |
125 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
39340894 |
tccatattgtgaagccgccaatcca |
39340870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39341757 - 39341678
Alignment:
| Q |
1 |
caaccactcctagaaaatcatgcttgaaaccaaagtaatttctcagaaaattttccactgtttgtcttccatcactgttt |
80 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| |
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|
| T |
39341757 |
caactactcctagaaaatcattcttgaaaccaaagtaatttctcagaaaaccttccacagtttggcttccaacactgttt |
39341678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 1082408 - 1082467
Alignment:
| Q |
66 |
cttccatcactgttttaaatgttttgttttacatctccatattgtgaagccaccaatcca |
125 |
Q |
| |
|
||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
1082408 |
cttccatcattgcattcaatgttttgttttagatctccatattgtgaagccatcaatcca |
1082467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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