View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_low_1 (Length: 560)
Name: NF17786_low_1
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 39293773 - 39294304
Alignment:
| Q |
18 |
attaactatctatatgctcgtgacgagataatattataaccaaactatcctgggttcattcgggttttttaactgagattaggctttatcaagaacggcc |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293773 |
attaactatctatatgctcgtgaagagataatattataaccaaactatcctgggttcattcgggttttttaactgagattaggctttatcaagaacggcc |
39293872 |
T |
|
| Q |
118 |
tataattcaaacctttcataggagtgccgnnnnnnntcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgat |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39293873 |
tataattcaaacctttcataggagtgcccaaaaaaatcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgat |
39293971 |
T |
|
| Q |
218 |
ttcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293972 |
ttcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagca |
39294071 |
T |
|
| Q |
318 |
gctcgtgaggcctttcataatggaccttgacctaaaatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagtttta |
417 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39294072 |
gcttgcgaggcctttcataatggaccttgacctaaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagtttta |
39294171 |
T |
|
| Q |
418 |
aaattacgttgatgatgacttattgctgcgttttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39294172 |
aaattacgttgatgatgacttattgctgcgttttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctt |
39294271 |
T |
|
| Q |
518 |
tattaacaggctgacaaagctgaagtacctatg |
550 |
Q |
| |
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||||||||||||||||||||| | ||||||||| |
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| T |
39294272 |
tattaacaggctgacaaagctaacgtacctatg |
39294304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
255 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
320 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| || |||||||| || |||||| |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 8357953 - 8357422
Alignment:
| Q |
18 |
attaactatctatatgctcgtgacgagataatattataaccaaactatcctgggttcattcgggttttttaactgagattaggctttatcaagaacggcc |
117 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8357953 |
attaactatttatatgctcgtgaagagataatattataaccaaactatcctaggttcattcgggttttttaactgagattaggctttgtcaagaacggcc |
8357854 |
T |
|
| Q |
118 |
tataattcaaacctttcataggagtgccgnnnnnnntcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgat |
217 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
8357853 |
tataattcaaacctttcataggagtgcacaaaaaaatcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgat |
8357755 |
T |
|
| Q |
218 |
ttcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357754 |
ttcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagca |
8357655 |
T |
|
| Q |
318 |
gctcgtgaggcctttcataatggaccttgacctaaaatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagtttta |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8357654 |
gctcgtgaggcctttcataatggaccttggcctaaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagtttta |
8357555 |
T |
|
| Q |
418 |
aaattacgttgatgatgacttattgctgcgttttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8357554 |
aaattacgttgatgatgacttattgctgcgttttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctt |
8357455 |
T |
|
| Q |
518 |
tattaacaggctgacaaagctgaagtacctatg |
550 |
Q |
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||||||||||||||||||||| | ||||||||| |
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| T |
8357454 |
tattaacaggctgacaaagcttatgtacctatg |
8357422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 154 - 441
Target Start/End: Complemental strand, 44000373 - 44000086
Alignment:
| Q |
154 |
tcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcac |
253 |
Q |
| |
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|||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44000373 |
tcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccacgcac |
44000274 |
T |
|
| Q |
254 |
aggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaa |
353 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
44000273 |
aggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttggcctaaa |
44000174 |
T |
|
| Q |
354 |
atgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttatt |
441 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| ||||||| |
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| T |
44000173 |
atgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
44000086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 438 - 550
Target Start/End: Complemental strand, 44000058 - 43999946
Alignment:
| Q |
438 |
tattgctgcgttttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
537 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
44000058 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
43999959 |
T |
|
| Q |
538 |
tgaagtacctatg |
550 |
Q |
| |
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||||||||||||| |
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| T |
43999958 |
tgaagtacctatg |
43999946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
219 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
280 |
Q |
| |
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||||| ||||||||||||||| | |||||| | |||||||||||||||||||| |||||||| |
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| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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