View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_low_2 (Length: 484)
Name: NF17786_low_2
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Complemental strand, 42456163 - 42455709
Alignment:
| Q |
14 |
gaaccagcgggcaatggttcgacagtcctcttgtcgaagccagctgnnnnnnntcgggccaagtcaaacaccacctgtcagataataaaaattgatcaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42456163 |
gaaccagcgggcaatggttcgacagtcctcttgtcgaagccagctgaaaaaaattgggccaagtcaaacaccacctgtcagataataaaaatcgatcaat |
42456064 |
T |
|
| Q |
114 |
gcgactcacagatttaccatcacctctgcaccacgtgtaactccgactccgaagaggtaaatcaaccaacaaattaccatcaatgaaatgattcaaaccg |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42456063 |
gcgactcacagatttaccatcacctctgtaccacgtgtaactccgactccgaagaggtaaatcaaccaacaaattaccgtcaatgaaatgattcaaaccg |
42455964 |
T |
|
| Q |
214 |
gccatccttgactgacaaacaatggttcccacactacgcctctcagacacattacggaccacattgatgtccccacagacacacattctgatcagcataa |
313 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42455963 |
gctatccctgactgacaaacaatggttcccacactacgcctctcagacacattacagaccacattgaagtccccacagacacacattctgatcagcataa |
42455864 |
T |
|
| Q |
314 |
ttaaccaacctgctagttatgttttcccaaagagattgctgacgggagacatcccacggagcgtagacattcaacaccacaaaacactcattagacttga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42455863 |
ttaaccaacctgctagttatgttttcccaaagagattgctgacgggagacatcccacggagcgtagacattgaacaccacaaaacactcattagacttga |
42455764 |
T |
|
| Q |
414 |
gaaaccggcccactattaaaagcacatgtgcaaaggacgtggacgaccaaacttc |
468 |
Q |
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| T |
42455763 |
gaaaccggcccactattaaaagcacatgcgcaaaggacgtggacgacccaacttc |
42455709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 354
Target Start/End: Original strand, 8251487 - 8251773
Alignment:
| Q |
70 |
ggccaagtcaaacaccacctgtcagataataaaaattgatcaatgcgactcacagatttaccatcacctctgcaccacgtgtaactccgactccgaagag |
169 |
Q |
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||||||||| | |||||| | ||||||||||| || |||| || ||||||| |||| | || |||||| | ||||||| |||| |||| |||||| |
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| T |
8251487 |
ggccaagtcgagcaccacttttcagataataagaaccgatcgatacgactcatagatcttccgtcacctttataccacgtaaaactacgaccttgaagag |
8251586 |
T |
|
| Q |
170 |
gtaaatcaaccaacaaattaccatcaatgaaatgattcaaaccggccatccttgactgacaaacaatggttcccacactacgcctctcagacacattacg |
269 |
Q |
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||||||||| || |||||||| |||||| |||||||| | ||| ||| || || ||||| | ||||||||| ||||| ||||||||||| || |
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| T |
8251587 |
gtaaatcaatcagcaaattacgatcaataaaatgattgagacctaccaaccctgtctgacgctggttttctcccacactgcgcctttcagacacattgcg |
8251686 |
T |
|
| Q |
270 |
gaccacattgatgtccccacagacaca--cattctgatcagcataattaaccaacctgctagttatgttttcccaaagagattgctg |
354 |
Q |
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||| |||||| || ||||| ||||| |||||||||||| |||| |||||||| || |||| || || ||||| |||||| |||| |
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| T |
8251687 |
aaccgcattgaaatcaccacatacacaaacattctgatcagtataagtaaccaacttgttagtaatattgtcccacagagatcgctg |
8251773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 44893737 - 44893805
Alignment:
| Q |
152 |
aactccgactccgaagaggtaaatcaaccaacaaattaccatcaatgaaatgattcaaaccggccatcc |
220 |
Q |
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|||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||| |
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| T |
44893737 |
aactgcgaccccgaagaggtaaatcaatcaacaaattaccatcaatgaactgattaagacctgccatcc |
44893805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 19156348 - 19156460
Alignment:
| Q |
112 |
atgcgactcacagatttaccatcacctctgcaccacgtgtaactccgactccgaagaggtaaatcaaccaacaaattaccatcaatgaaatgattcaaac |
211 |
Q |
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|||||||||| |||||||||||| || || ||||||| ||| |||| ||| ||||| | ||| | ||||| |||||||||||| || ||||| |||| |
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| T |
19156348 |
atgcgactcatagatttaccatctcccttgtaccacgtaagactacgaccccgtagaggaagatcgatcaacatattaccatcaataaattgattaaaac |
19156447 |
T |
|
| Q |
212 |
cggccatccttga |
224 |
Q |
| |
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| |||||||||| |
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| T |
19156448 |
cttccatccttga |
19156460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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