View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_low_3 (Length: 461)
Name: NF17786_low_3
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 31 - 440
Target Start/End: Original strand, 42071636 - 42072049
Alignment:
| Q |
31 |
gtttctaaattttttgtgtgtgcacatgtacacacatagaacaacatgcatctgtcatcggcaatgtaaaacttgaaacaaacttcaaaccctcacacct |
130 |
Q |
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| T |
42071636 |
gtttctaaattttttgtgtgtgcacatgtccacacatagaacaacatgcatctgtcatcggcaatgtaaaacttgaaacaaacttcaaaccctcacacct |
42071735 |
T |
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| Q |
131 |
caaagg----atctcaccacaatagatttatatcattacatttgaaggaacatatgcattttaatacaattctttaagtgggatttatgaatagtaatga |
226 |
Q |
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| T |
42071736 |
caaaggaaggatctcactacaatagatttatatcattacatttgaaggaacatatgcattttaatacaattctttaagtgagattcatgaaaagtaatga |
42071835 |
T |
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| Q |
227 |
aatatatgatgcttctataatcttattttcgataagcatcaatttttcttactacataaaaacaatatctatttaacttaatgttaaataggtgacacac |
326 |
Q |
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| T |
42071836 |
gatatatgatgcttttataatcttattctcgataagcatcaatttttcttactacataaaaacaatatctatttaacttgatgttaaataggtgacacac |
42071935 |
T |
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| Q |
327 |
gcaccattctagatgcactaagttaaatcgatcaaataaacaaaattaaagaaacataagatagtgcatgtaaagtcaaaatatatctgtttaaagtgat |
426 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42071936 |
gcaccattctagatgctctaagttaaatcgatcaaataaacaaaattaaacaaacataagatagtgcatgtaaagtcaaaatatatatgtttaaagtgat |
42072035 |
T |
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| Q |
427 |
tttgccattaagat |
440 |
Q |
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| T |
42072036 |
tttgccattaagat |
42072049 |
T |
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