View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_low_4 (Length: 446)
Name: NF17786_low_4
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 23244593 - 23244255
Alignment:
| Q |
1 |
taattttggatttctcccaatggaccaaacattgacaaagagtaatgtgttttctgggatcacatagttttcaactttgcattctgctacacatcttctt |
100 |
Q |
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| T |
23244593 |
taattttggatttctcc-aatggaccaaacattgacaaagagtaatgtgttttctgggatcacatagttttcaactttgcattctgctacacatcttctt |
23244495 |
T |
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| Q |
101 |
gtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttt |
200 |
Q |
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| T |
23244494 |
gtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttt |
23244395 |
T |
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| Q |
201 |
tgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgggt--ttttatgagttctactaatgcccattctgttgatattgttgttgtat |
298 |
Q |
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| T |
23244394 |
tgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgggtttttttatgagttctactaatgcccattctgttgatattgctgttgtat |
23244295 |
T |
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| Q |
299 |
ctgttcctgctgtgaagaaatcctacaaatccaaggcatt |
338 |
Q |
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| T |
23244294 |
ctgttcctgctgtgaagaaatcctacaaatccaaggcatt |
23244255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 23244182 - 23244141
Alignment:
| Q |
394 |
ttgtattggttttccataatgatttttctttgatataatttt |
435 |
Q |
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| T |
23244182 |
ttgtattggttttccataatgatttttctttgatataatttt |
23244141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 23244237 - 23244197
Alignment:
| Q |
355 |
tttgtgactcaaactttcttcaaacattcaaaatacattttg |
396 |
Q |
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| T |
23244237 |
tttgtgactcaaactttcttcaaacattc-aaatacattttg |
23244197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 322
Target Start/End: Original strand, 9381425 - 9381698
Alignment:
| Q |
50 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
149 |
Q |
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| T |
9381425 |
ttttctgggatcacataattttcaattttacattgcgtgacacatcttctagtgaccatagggacgggtgggtgtagacgaaatgtttcttttattatgg |
9381524 |
T |
|
| Q |
150 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
249 |
Q |
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| T |
9381525 |
cttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtctatttcttcacgagctttttgtaataatgaagg |
9381624 |
T |
|
| Q |
250 |
gtt-tttatgagttctactaatgcccattctgttgatattgttgttgtatctgttcctgctgtgaagaaatcct |
322 |
Q |
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||| || || || || |||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||| |
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| T |
9381625 |
gttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaaaaaatcct |
9381698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 322
Target Start/End: Original strand, 9398850 - 9399123
Alignment:
| Q |
50 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
149 |
Q |
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||||||||||||||||| ||||||| |||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||||||||| |||| || | |
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| T |
9398850 |
ttttctgggatcacataattttcaattttgcattgcgtgacacatcttctagtgaccataggaaccggtgggtgtagacgaaatgtttcttttattatgg |
9398949 |
T |
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| Q |
150 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
249 |
Q |
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|||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |||||||||||||||||||| | || || || |
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| T |
9398950 |
cttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcacgagctttttgtaacaatgaagg |
9399049 |
T |
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| Q |
250 |
gtt-tttatgagttctactaatgcccattctgttgatattgttgttgtatctgttcctgctgtgaagaaatcct |
322 |
Q |
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| T |
9399050 |
gttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtaaagaaatcct |
9399123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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