View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17786_low_7 (Length: 381)
Name: NF17786_low_7
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 24167832 - 24168192
Alignment:
| Q |
19 |
atcaatagtagacagcagaataatctaaaatcttaatattttcattgaaccctacaccaattttgagagtaacctatagaaaaccaaccccagtagcagc |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24167832 |
atcaatagtagacagcaggataatctaaaatcttaatattttcattgaaccctacaccaattttgagagtaacctatagaaaaccaaccccagtagcagc |
24167931 |
T |
|
| Q |
119 |
agggagttcactaaaaccaatttctacaagattcaaacacctatggctgaaatatttcttccgcagtagaaaagaaccaaacatacactacgactcatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24167932 |
agggagttcactaaaaccaatttctacaagattcaaacacctatggctgaaatatttcttccgcagtagaaaagaaccaaacatacactacgactcatgt |
24168031 |
T |
|
| Q |
219 |
gcacctcaaaatctttctccaaaacggaaaaatattgcacctgttcctgagttatgatcaaccgcatattccgctctcactaacccaagcttcataccag |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24168032 |
gcacctcaaaatctttcaccaaaacggaaaaatattgcacctgttcctgagttatgatcaaccgcgtattccgctctcactaacccaagcttcataccag |
24168131 |
T |
|
| Q |
319 |
caccataagaggacccctgacccattctcctatagacttctgttggattttcttcgacatc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
24168132 |
caccataagaggacccctgacccattctcctatagacttctgttggatttcctttgacatc |
24168192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 380
Target Start/End: Original strand, 41736816 - 41736962
Alignment:
| Q |
234 |
tctccaaaacggaaaaatattgcacctgttcctgagttatgatcaaccgcatattccgctctcactaacccaagcttcataccagcaccataagaggacc |
333 |
Q |
| |
|
||||||||||| ||| ||| |||||| ||||||||||||||||||| |||||||| ||||| || || |||||||| |||| |||||||||| || | |
|
|
| T |
41736816 |
tctccaaaacgtaaatataatgcaccagttcctgagttatgatcaatggcatattctgctctgaccaaaccaagcttagcaccaacaccataagatgaac |
41736915 |
T |
|
| Q |
334 |
cctgacccattctcctatagacttctgttggattttcttcgacatcc |
380 |
Q |
| |
|
| |||||||||| ||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
41736916 |
cttgacccattcgcctatagacttctgtaggattccctttgacatcc |
41736962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 361
Target Start/End: Original strand, 4601018 - 4601163
Alignment:
| Q |
216 |
tgtgcacctcaaaatctttctccaaaacggaaaaatattgcacctgttcctgagttatgatcaaccgcatattccgctctcactaacccaagcttcatac |
315 |
Q |
| |
|
|||||| || |||| || |||||||| |||||||||| ||||| ||||||||||||||||||| ||||||| ||||| || || |||| ||| || |
|
|
| T |
4601018 |
tgtgcagcttaaaacctctctccaaatcggaaaaataaggcaccagttcctgagttatgatcaatgacatattctgctctgaccaaaccaaacttggcac |
4601117 |
T |
|
| Q |
316 |
cagcaccataagaggacccctgacccattctcctatagacttctgt |
361 |
Q |
| |
|
|| |||||||||| || || |||||| ||| ||||||||||||||| |
|
|
| T |
4601118 |
caacaccataagatgaaccttgacccgttcacctatagacttctgt |
4601163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University