View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17786_low_9 (Length: 311)
Name: NF17786_low_9
Description: NF17786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17786_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 48682439 - 48682144
Alignment:
| Q |
1 |
agatggaaatgaaaagtaacaaagcagtaaaatgatatccatccaacatctct--ttggtaacaagcaacttgtacctctctgtttctttttgtttcgga |
98 |
Q |
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| T |
48682439 |
agatggaaatgaaaagtaactaagcagtaaaatgatatccatccaacatctctctttggtaacaagcaacttgtacctctctgtttc----------gga |
48682350 |
T |
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| Q |
99 |
taacagagtaaagggtttttgcagggttttattcttcttcttctt---------------atcatctttcttaaacaaacaatatgggttctttggagaa |
183 |
Q |
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| T |
48682349 |
taacagagtaaagggtttttgcagggttttattcttcttcttcttcttcttcttcttcttatcatctttcttaaacaaacaatatgggttctttggagaa |
48682250 |
T |
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| Q |
184 |
tggaacaccgaagaaaatcagagaagaagaaacagaggaaccaatactgatgaaacaaacacaaaggttttgtatgttccctattcgctacaaacaactt |
283 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48682249 |
tggaacaccgaagaaaataagagaagaagaaacagaggaaccaatactgatgaaacaaacacaaaggttttgtatgttccctgttcgctacaaacaactt |
48682150 |
T |
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