View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_high_1 (Length: 699)
Name: NF17787_high_1
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 360 - 686
Target Start/End: Original strand, 52180876 - 52181203
Alignment:
| Q |
360 |
gataaatcaatggttaaaggaataataaaatccaaaagtaaatatgaagtcaatattgtcattttatttttcacactatatacaaatgaatgcaatgcag |
459 |
Q |
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| T |
52180876 |
gataaatcaatggttaaaggaataataaaatccagaagtaaatatgaagtcaatattgtcattttatttttcacactata--caaatgaatgcaatgcag |
52180973 |
T |
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| Q |
460 |
atgtaatcaagcaagcagtatctttagcaccatcattatacaaatggtagttcattttaaagatatcatatggcac-----tcatgttcacttgcattgg |
554 |
Q |
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| T |
52180974 |
atgtaatcaagcaagcagtatctttagcaccatcattatacaaatggtagttcattttaaagatatcatatggcactcatgtcatgttcacttgcattgg |
52181073 |
T |
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| Q |
555 |
aatttgtttttgcaaaaacacactcataacataatgataaatacaacaactaatnnnnnnnncaaataaagacaattcccacatgagttttcaaatacat |
654 |
Q |
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| T |
52181074 |
aatttg-ttttgcaaaaacacactcataacataatgataaatacaacaactaat-aaaaaaacaaataaagacaattcctacatgagttttcaaacacat |
52181171 |
T |
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| Q |
655 |
tcaaagcactaaagattttgaatccttctaag |
686 |
Q |
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| T |
52181172 |
tcaaagcactaaagattttgaatccttctaag |
52181203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 52180518 - 52180707
Alignment:
| Q |
1 |
ttttaattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaagggtacttc |
100 |
Q |
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| T |
52180518 |
ttttaattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaagggtacttc |
52180617 |
T |
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| Q |
101 |
agcacatgataattaacaatatgctaagtcaaagccagagaaatttgacaattagaagaattttcaataatatcatttgaggagagggag |
190 |
Q |
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| T |
52180618 |
agcacatgataattaacaatatgctaagtcaaagccagagaaatttgacaattagaagaattttcaataatatcatttgaggagagggag |
52180707 |
T |
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