View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_high_16 (Length: 377)
Name: NF17787_high_16
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 24687896 - 24687546
Alignment:
| Q |
19 |
tctaacacctctgatgaaaaacgtgtctggtatatcgtgtttaatactagtaataaaaaagtagcatcaggatttgtggaggggagagaaaagaagaaga |
118 |
Q |
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| T |
24687896 |
tctaacacctctgatgaaaaacatgtctggtatatcgtgtttaatactagtaataaaaaagtagtatcaggatttgtggaggggagagaaaagaagaaga |
24687797 |
T |
|
| Q |
119 |
atgtgagtaaagacagaaaacatgttgaggcttagcttggaactatac--nnnnnnnnnnnnncaaggactcacggatgaacaattgacataaagaaagc |
216 |
Q |
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| T |
24687796 |
atgtgagtaaagacagaaaacatgttgaggcttagcttggaactatacagagagagagagagacaaggactcacggatgaacaattgacataaagaaagc |
24687697 |
T |
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| Q |
217 |
acgggtgttaaaagtaagaaacaaacctggttatgaagcatgggaggaatgattctttgtgnnnnnnnnnnnnngagtatggtgggaatgattcatgtat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24687696 |
acgggtgttaaaagtaagaaacaaacctggttatgaagcatgggaggaatgattctttgtgaaaaagaaaaaaagagtatggtgggaatgattcatgtat |
24687597 |
T |
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| Q |
317 |
cttgaaagggtattgtttttaaaggtggagttaagtcatgacatgcctttg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24687596 |
cttgaaagggtattgtttttaaaggtggagttaagtcatgacatgcctttg |
24687546 |
T |
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