View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17787_high_2 (Length: 665)

Name: NF17787_high_2
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17787_high_2
NF17787_high_2
[»] scaffold0111 (1 HSPs)
scaffold0111 (366-648)||(33657-33939)
[»] scaffold0001 (1 HSPs)
scaffold0001 (31-232)||(47764-47965)
[»] scaffold0703 (1 HSPs)
scaffold0703 (15-232)||(6631-6848)
[»] scaffold1120 (1 HSPs)
scaffold1120 (164-315)||(307-459)
[»] chr2 (26 HSPs)
chr2 (521-646)||(20371633-20371758)
chr2 (183-315)||(17686377-17686510)
chr2 (30-232)||(25262588-25262792)
chr2 (183-275)||(28479888-28479980)
chr2 (183-275)||(21149978-21150070)
chr2 (181-237)||(21851535-21851591)
chr2 (181-237)||(21859970-21860026)
chr2 (183-275)||(34543045-34543137)
chr2 (186-275)||(21322005-21322094)
chr2 (186-275)||(39756250-39756339)
chr2 (185-232)||(33308186-33308233)
chr2 (185-275)||(27425289-27425379)
chr2 (185-275)||(27440335-27440425)
chr2 (183-275)||(34529071-34529164)
chr2 (185-232)||(44373736-44373782)
chr2 (185-232)||(44389647-44389693)
chr2 (183-228)||(26718655-26718699)
chr2 (183-228)||(26732843-26732887)
chr2 (183-227)||(20622458-20622502)
chr2 (184-227)||(22186090-22186133)
chr2 (186-228)||(35038869-35038910)
chr2 (184-275)||(11625983-11626074)
chr2 (184-275)||(11647192-11647283)
chr2 (187-233)||(27605541-27605587)
chr2 (184-217)||(4281575-4281608)
chr2 (191-227)||(25193113-25193149)
[»] chr3 (30 HSPs)
chr3 (521-648)||(13508718-13508845)
chr3 (183-275)||(16289505-16289597)
chr3 (185-275)||(2216562-2216652)
chr3 (183-275)||(11262286-11262379)
chr3 (189-315)||(13603387-13603514)
chr3 (186-336)||(14537717-14537867)
chr3 (186-275)||(9184899-9184988)
chr3 (186-275)||(52987409-52987499)
chr3 (184-232)||(1005747-1005795)
chr3 (183-239)||(4504929-4504985)
chr3 (184-275)||(4444307-4444398)
chr3 (189-275)||(31852325-31852412)
chr3 (186-275)||(50754220-50754310)
chr3 (183-228)||(27551887-27551931)
chr3 (183-228)||(28469260-28469304)
chr3 (184-275)||(22876709-22876800)
chr3 (184-275)||(22891769-22891860)
chr3 (183-228)||(1775839-1775884)
chr3 (183-228)||(4887692-4887737)
chr3 (183-228)||(5517766-5517811)
chr3 (184-275)||(5203751-5203842)
chr3 (184-275)||(9723226-9723317)
chr3 (183-237)||(20053168-20053223)
chr3 (183-237)||(20075828-20075883)
chr3 (184-275)||(22861550-22861641)
chr3 (186-228)||(18954624-18954665)
chr3 (81-134)||(23755438-23755491)
chr3 (184-217)||(23755544-23755577)
chr3 (184-284)||(35874971-35875071)
chr3 (184-284)||(35890040-35890140)
[»] chr6 (21 HSPs)
chr6 (521-646)||(5488550-5488675)
chr6 (439-543)||(15391006-15391110)
chr6 (183-275)||(3042353-3042445)
chr6 (184-275)||(16587761-16587852)
chr6 (184-275)||(16607528-16607619)
chr6 (161-275)||(24919129-24919243)
chr6 (184-275)||(20215977-20216068)
chr6 (184-275)||(22109998-22110089)
chr6 (184-239)||(27048675-27048730)
chr6 (184-239)||(27058919-27058974)
chr6 (183-232)||(30996948-30996997)
chr6 (184-275)||(17092468-17092559)
chr6 (184-275)||(24296429-24296519)
chr6 (184-275)||(24310460-24310550)
chr6 (186-275)||(877419-877509)
chr6 (183-228)||(19827582-19827626)
chr6 (184-236)||(5488166-5488218)
chr6 (183-227)||(5995692-5995736)
chr6 (188-232)||(15390685-15390729)
chr6 (186-225)||(1141767-1141806)
chr6 (202-275)||(24737449-24737523)
[»] chr4 (15 HSPs)
chr4 (161-275)||(32215881-32215995)
chr4 (183-275)||(24923243-24923335)
chr4 (183-275)||(17141824-17141916)
chr4 (186-275)||(26447171-26447261)
chr4 (194-275)||(638076-638158)
chr4 (183-232)||(4749044-4749093)
chr4 (183-227)||(12997535-12997579)
chr4 (184-249)||(772264-772329)
chr4 (183-275)||(5405293-5405386)
chr4 (183-228)||(21531355-21531399)
chr4 (184-236)||(20866841-20866893)
chr4 (184-275)||(52296690-52296781)
chr4 (184-216)||(48077653-48077685)
chr4 (183-228)||(17008297-17008342)
chr4 (183-228)||(17022261-17022306)
[»] scaffold0027 (1 HSPs)
scaffold0027 (183-275)||(64670-64762)
[»] chr8 (10 HSPs)
chr8 (81-232)||(17663526-17663679)
chr8 (81-232)||(17682682-17682835)
chr8 (121-227)||(26872596-26872703)
chr8 (186-275)||(4836460-4836550)
chr8 (186-275)||(4841905-4841995)
chr8 (183-275)||(4838715-4838807)
chr8 (186-275)||(2750241-2750331)
chr8 (192-238)||(23091551-23091597)
chr8 (186-227)||(36577971-36578012)
chr8 (183-227)||(26875117-26875161)
[»] chr5 (12 HSPs)
chr5 (81-227)||(31411814-31411963)
chr5 (186-238)||(29185268-29185320)
chr5 (184-237)||(31549533-31549586)
chr5 (187-275)||(29189206-29189294)
chr5 (183-227)||(23568473-23568517)
chr5 (183-227)||(31422722-31422766)
chr5 (186-228)||(20371908-20371949)
chr5 (186-228)||(20397632-20397673)
chr5 (186-249)||(2826851-2826915)
chr5 (184-275)||(41669250-41669341)
chr5 (184-275)||(41684057-41684148)
chr5 (184-217)||(8949134-8949167)
[»] scaffold0669 (1 HSPs)
scaffold0669 (161-275)||(6008-6122)
[»] scaffold0609 (1 HSPs)
scaffold0609 (183-275)||(2502-2594)
[»] scaffold0206 (1 HSPs)
scaffold0206 (185-275)||(19468-19558)
[»] chr7 (24 HSPs)
chr7 (183-239)||(17515789-17515845)
chr7 (183-239)||(17537369-17537425)
chr7 (183-239)||(559882-559938)
chr7 (183-239)||(569791-569847)
chr7 (185-275)||(4185136-4185226)
chr7 (184-234)||(38411779-38411829)
chr7 (184-232)||(27967386-27967434)
chr7 (184-232)||(27976839-27976887)
chr7 (185-232)||(5200600-5200647)
chr7 (185-232)||(5209729-5209776)
chr7 (183-239)||(16911192-16911248)
chr7 (186-236)||(15974735-15974785)
chr7 (183-228)||(1887938-1887982)
chr7 (183-228)||(1902039-1902083)
chr7 (186-239)||(16544205-16544258)
chr7 (186-239)||(16621404-16621457)
chr7 (183-228)||(24187137-24187181)
chr7 (191-238)||(16474424-16474471)
chr7 (186-275)||(48305444-48305534)
chr7 (184-275)||(18537983-18538074)
chr7 (184-275)||(18548491-18548582)
chr7 (184-284)||(5167708-5167808)
chr7 (186-226)||(18788155-18788194)
chr7 (184-224)||(32090844-32090884)
[»] chr1 (11 HSPs)
chr1 (183-237)||(18750196-18750250)
chr1 (186-336)||(41745803-41745953)
chr1 (185-275)||(18597049-18597139)
chr1 (189-275)||(179827-179914)
chr1 (184-227)||(13463836-13463879)
chr1 (186-275)||(8402068-8402158)
chr1 (186-225)||(3650803-3650842)
chr1 (186-236)||(11949174-11949224)
chr1 (201-239)||(20500897-20500935)
chr1 (184-217)||(35197954-35197987)
chr1 (192-275)||(22348261-22348345)
[»] scaffold1896 (1 HSPs)
scaffold1896 (121-227)||(441-548)
[»] scaffold0016 (1 HSPs)
scaffold0016 (187-232)||(24491-24536)
[»] scaffold0853 (1 HSPs)
scaffold0853 (184-275)||(4223-4314)
[»] scaffold0497 (1 HSPs)
scaffold0497 (186-232)||(11845-11890)
[»] scaffold2141 (1 HSPs)
scaffold2141 (186-225)||(158-197)
[»] scaffold2066 (1 HSPs)
scaffold2066 (184-275)||(805-896)


Alignment Details
Target: scaffold0111 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 366 - 648
Target Start/End: Complemental strand, 33939 - 33657
Alignment:
Q  366 ttctacctctgttactttctgaaacggatctggattgctattctttctcacgctctttattcaggctcggtctcgttgttggatgatacggtttcacctt 465  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  33939 ttctacctctgttactttctgaaacggatctggcttgctattctttttcatgctctttattcaagatcggtctcgttgttggatgattcggtttcacctt 33840  T
Q  466 cttctctttcacgttcggtccgaaccttgatgttacggttccgtttgtgctttgttccggtccggcttgaactcgttgttgattcacgaccggttgggat 565  Q
    ||||||||||||| ||||||  ||  |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33839 cttctctttcacgctcggtcgaaattttgatgttacagtttcgtttgtgctttgttccggtccggcttgaattcgttgttgattcacgaccggttgggat 33740  T
Q  566 ttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgtgtaaaagaaagaagcgaaaatagtgtgt 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33739 ttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattattgtgtaaaagaaagaagcgaaaatagtgtgt 33657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 47764 - 47965
Alignment:
Q  31 taggattaaagtgagggaggaggtataaaaacacgttgttgttgctgtaacttcatttttacaaagaaacttctcacaaaaaatgttttactcacttctc 130  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47764 taggattaaagtgagggaggaggtataaaaacacgttgcagttgctgtaacttcatttttacaaagaaacttctcactaaaaatgttttactcacttctc 47863  T
Q  131 tctcaacaaaacaaacagccgccccctcttgct-tcttctccgatgag-ttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||| |||||   ||||||| ||||||||| |||| ||||||||||||||||||||    
T  47864 tctcaacaaaacaaacagccgccccctcttgctatcttctcagacgagattcac-aattccggcacggtggccgatggt-gcaccaccgtgccggagttt 47961  T
Q  229 caaa 232  Q
    ||||    
T  47962 caaa 47965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 6631 - 6848
Alignment:
Q  15 cataggctatacaacataggattaaagtgagggaggaggtataaaaacacgttgttgttgctgtaacttcatttttacaaagaaacttctcacaaaaaat 114  Q
    |||||||| || | |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||    
T  6631 cataggctgtagagcataggattaaagtgagggaggaggtataaaaacacgttgctgctgctgtgacttcatttttacaaagaaacttctcactaaaaat 6730  T
Q  115 gttttactcacttctctctcaacaaaacaaacagccgccccctcttgct-tcttctccgatgag-ttcacgttttccggcgcggtggccggtggtggcac 212  Q
     |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||| |||||   |||||||  ||||||||||||| ||||    
T  6731 attttacccacttctctctcaacaaaacaaacagccgcccccttttgctatcttctcagacgagattcac-aattccggcaaggtggccggtggt-gcac 6828  T
Q  213 caccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||    
T  6829 caccgtgccggagtttcaaa 6848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 459 - 307
Alignment:
Q  164 tcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatca-aaaagtttttacatttt 262  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  459 tcttctccgacgagttcatgttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctaaatcaaaaaagtttttacgtttt 360  T
Q  263 taaacatccttttcttcatacttttcgaaaatccacttagttttcacaaacaa 315  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  359 taaacatccgtttcttcatacttttcgaaaatctacttaattttcacaaacaa 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 521 - 646
Target Start/End: Original strand, 20371633 - 20371758
Alignment:
Q  521 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 620  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20371633 tccggtctggcttgaactcgtggttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattattgt 20371732  T
Q  621 gtaaaagaaagaagcgaaaatagtgt 646  Q
    ||||||||||||||||||||||||||    
T  20371733 gtaaaagaaagaagcgaaaatagtgt 20371758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 17686377 - 17686510
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaa-agtttttacatttttaaacatccttttcttcat 281  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17686377 gttttccggcgcgatggccggtggtggcaccaccgcgccggagtttcaaactcctctaaatcaaaaaagtttttacgtttttaaacatccttttcttcat 17686476  T
Q  282 acttttcgaaaatccacttagttttcacaaacaa 315  Q
    |||||||||||||| |||||||||||||||||||    
T  17686477 acttttcgaaaatctacttagttttcacaaacaa 17686510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 25262792 - 25262588
Alignment:
Q  30 ataggattaaagtgagggaggaggtataaaaacacgttgttgttgctgtaacttcat-ttttacaaagaaacttctcacaaaaaatgttttactcacttc 128  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||| ||||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  25262792 ataggattaaagtgagggaggaggtataaaaacatgttgctgctgctgtgacttcattttttacaaagaaacttctcactaaaaatattttacccacttc 25262693  T
Q  129 tctctcaacaaaacaaacagccgccccctcttgc--ttcttctccgatgagttcac-gttttccggcgcggtggccggtggtggcaccaccgtgccggag 225  Q
    ||||| |  ||||||  ||| |||||||| |  |  ||||||||||  ||    ||   ||||||||||||||||||||||||||||||||| |||||||    
T  25262692 tctct-agaaaaacagccag-cgccccctttcccctttcttctccggcgaagcaacaaatttccggcgcggtggccggtggtggcaccaccgcgccggag 25262595  T
Q  226 tttcaaa 232  Q
    |||||||    
T  25262594 tttcaaa 25262588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 28479980 - 28479888
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||| |||||| || || ||||||| |||||||||||||||||||||||||    
T  28479980 gttttccggcgcagtggccggtggtggcgccaccgcgccggagttttaaactcgtccaattcaaaaactttttacatttttaaacatcctttt 28479888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 21150070 - 21149978
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||| || ||||||||| |||||| |||||||||| |||||||||  | ||||||  |||||||||||||||||||||||||    
T  21150070 gttttccggcgcggtagctggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaagctttttacatttttaaacatcctttt 21149978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 21851535 - 21851591
Alignment:
Q  181 acgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcct 237  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  21851535 acgttttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcct 21851591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 21859970 - 21860026
Alignment:
Q  181 acgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcct 237  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  21859970 acgttttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcct 21860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 34543045 - 34543137
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |  | ||||||| | ||||| ||||||||| |||||||    
T  34543045 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtgtgaaactccgccgattcaaaaattgtttacgtttttaaacctcctttt 34543137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 21322005 - 21322094
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||||||| ||||||| |  |||| ||||  | ||| ||| |||||||| ||||||||||||||||    
T  21322005 ttccggcgcggtggccggtggtggcaccaccgcgccggaggtcgaaacccctccgattcacaaactttttacacttttaaacatcctttt 21322094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 39756339 - 39756250
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | ||||||| |||||||| ||| ||| ||||||||    
T  39756339 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaactttttacactttcaaatatcctttt 39756250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 33308186 - 33308233
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33308186 tttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 33308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 27425289 - 27425379
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | |||| || |||||||| ||| ||| ||||||||    
T  27425289 tttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaagaactttttacactttcaaatatcctttt 27425379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 27440335 - 27440425
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | |||| || |||||||| ||| ||| ||||||||    
T  27440335 tttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaagaactttttacactttcaaatatcctttt 27440425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 34529071 - 34529164
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtg-ccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| | ||||||| |  | ||||||| | ||||| ||||||||| |||||||    
T  34529071 gttttccggcgcggtggccggtggtggcaccaccgcgcccggagtgtgaaactccgccgattcaaaaattgtttacgtttttaaacctcctttt 34529164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 44373782 - 44373736
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  44373782 tttccggcgcggtggccggtggtg-caccaccgtgccggagtttcaaa 44373736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 44389693 - 44389647
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  44389693 tttccggcgcggtggccggtggtg-caccaccgtgccggagtttcaaa 44389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 26718655 - 26718699
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26718655 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 26718699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 26732843 - 26732887
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26732843 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 26732887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 20622502 - 20622458
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  20622502 gttttccagcgcggtggccggtggtggcaccaccgcgccggagtt 20622458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 22186133 - 22186090
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    ||||| |||||||||||||||||||||||||||| |||||||||    
T  22186133 ttttctggcgcggtggccggtggtggcaccaccgcgccggagtt 22186090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 35038910 - 35038869
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  35038910 ttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 35038869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 11625983 - 11626074
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| ||||||||| ||| |||||||||  ||||| |||  | |||||   ||||||| |||||||||||||||||    
T  11625983 ttttccggcgcggaggacggcggtggcacctccgcgccggagttcgaaactgctccgattcaaattttttttacgtttttaaacatcctttt 11626074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 11647192 - 11647283
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||  ||||||| |||||||||||||||||    
T  11647192 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaactgctccgattcaaaatttttttacgtttttaaacatcctttt 11647283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 27605541 - 27605587
Alignment:
Q  187 tccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaac 233  Q
    |||||| |||||||||| ||||||||||||| | |||||||||||||    
T  27605541 tccggcacggtggccggaggtggcaccaccgcgtcggagtttcaaac 27605587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 4281608 - 4281575
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccg 217  Q
    ||||||||||||||||||||||||||||| ||||    
T  4281608 ttttccggcgcggtggccggtggtggcactaccg 4281575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 25193113 - 25193149
Alignment:
Q  191 gcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    |||| |||||||||||||||||||||| |||||||||    
T  25193113 gcgcagtggccggtggtggcaccaccgcgccggagtt 25193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 521 - 648
Target Start/End: Original strand, 13508718 - 13508845
Alignment:
Q  521 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 620  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13508718 tccggtctggcttgaactcgtggttgattcacgaccggtagggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgtgtgattactgt 13508817  T
Q  621 gtaaaagaaagaagcgaaaatagtgtgt 648  Q
    ||||||||||||||||||||||||||||    
T  13508818 gtaaaagaaagaagcgaaaatagtgtgt 13508845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 16289597 - 16289505
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||  | ||||||| |||||||||||||||||||||||||    
T  16289597 gttttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaagtcctccgattcaaaaactttttacatttttaaacatcctttt 16289505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 2216562 - 2216652
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||  | ||||||| |||||| ||||||||||||||||||    
T  2216562 tttccggtgcggtggccggtggtggcgccaccgcgccggagtttcaaactcctccgattcaaaaactttttatatttttaaacatcctttt 2216652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 11262286 - 11262379
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgcc-ggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||  | ||||||| ||||||| |||||||||||||||||    
T  11262286 gttttccggcgcggtggccggtggtggcgccaccgcgccgggagttttaaactcctccgattcaaaaactttttacgtttttaaacatcctttt 11262379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 13603387 - 13603514
Alignment:
Q  189 cggcgcggtggccggtggtggcaccaccgtgccggag-tttcaaactcctctaaatcaaaaagtttttacatttttaaacatccttttct-tcatacttt 286  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||| | |||||||||| | ||||| ||||||||||||||||| | || | ||||    
T  13603387 cggcgcggtggccgatggtggcaccaccgcgccggagttttcaaactccgccaaatcaaaaattatttacgtttttaaacatccttttttctcct-cttt 13603485  T
Q  287 tcgaaaatccacttagttttcacaaacaa 315  Q
     | || ||| |||||||||||||||||||    
T  13603486 ccaaagatctacttagttttcacaaacaa 13603514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 14537717 - 14537867
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa-ctcctctaaatcaaaaagtttttacatttttaaacatccttttcttcatact 284  Q
    |||||||  |||||||||||||| |||| |||||||||||||||||| |||| |    |||||||    |||  |||||||||||||||||||||||||     
T  14537717 ttccggcatggtggccggtggtg-caccgccgtgccggagtttcaaaactccgccgtttcaaaaataaattatctttttaaacatccttttcttcatacg 14537815  T
Q  285 tttcgaaaatccacttagttttcacaaacaatcacgaaataagcctagatct 336  Q
    |||| ||||||||||||||||| || ||||| ||| ||| || |||||||||    
T  14537816 tttcaaaaatccacttagtttttacgaacaaacaccaaacaatcctagatct 14537867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 9184899 - 9184988
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttc-aaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||   ||||||| | ||||| |||||||||||||||||    
T  9184899 ttccggcgcggtggccggtggtg-caccaccgtgccggagtttcaaaactccgctgtttcaaaaattgtttacgtttttaaacatcctttt 9184988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 52987499 - 52987409
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaact-cctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||| ||||||||||||||||| |||||||||  ||||| | || ||||||||||||||||||  ||||| ||||||||||    
T  52987499 ttccggcgcggtggtcggtggtggcaccaccgcgccggagttcaaaactgcatccaaatcaaaaagtttttacggttttagacatcctttt 52987409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 1005747 - 1005795
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1005747 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 1005795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 4504929 - 4504985
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  4504929 gttttccggcgcggtggccggtggtggcaccaccacgccggaatttcaaactcctct 4504985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 4444398 - 4444307
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||| ||||||||||||  |||||||||  |||||||||  | |||||   || ||||||||||||||||||||||    
T  4444398 ttttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattcaaatttttcttacatttttaaacatcctttt 4444307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 31852325 - 31852412
Alignment:
Q  189 cggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||||||| | || ||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  31852325 cggcgcggtggccggtggtggcaccactgcgctggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 31852412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 50754220 - 50754310
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||| ||||||||||||| ||||||||  ||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  50754220 ttccggcgcagtggccggtggtgacaccaccgcaccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 50754310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 27551887 - 27551931
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  27551887 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 27551931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 28469260 - 28469304
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28469260 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 28469304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 22876709 - 22876800
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| |||||||||||||||||    
T  22876709 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaattttttacgtttttaaacatcctttt 22876800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 22891769 - 22891860
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| |||||||||||||||||    
T  22891769 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaattttttacgtttttaaacatcctttt 22891860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 1775884 - 1775839
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||    
T  1775884 gttttccggcgcggtggccggtggtggcgccgccgcgccggagttt 1775839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 4887737 - 4887692
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||    
T  4887737 gttttccggcgcggtggccggtggtggcgccgccgcgccggagttt 4887692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 5517766 - 5517811
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||    
T  5517766 gttttccggcgcggtggccggtggtggcgccgccgcgccggagttt 5517811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 5203842 - 5203751
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  5203842 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 5203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 9723226 - 9723317
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  9723226 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 9723317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 20053223 - 20053168
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggag-tttcaaactcct 237  Q
    |||||||||||||||||||||||||||| || ||| ||||||| ||| ||||||||    
T  20053223 gttttccggcgcggtggccggtggtggcgccgccgcgccggagctttaaaactcct 20053168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 20075883 - 20075828
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggag-tttcaaactcct 237  Q
    |||||||||||||||||||||||||||| || ||| ||||||| ||| ||||||||    
T  20075883 gttttccggcgcggtggccggtggtggcgccgccgcgccggagctttaaaactcct 20075828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 22861550 - 22861641
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||  ||||||| |||||||||||||||||    
T  22861550 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaatttttttacgtttttaaacatcctttt 22861641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 18954624 - 18954665
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  18954624 ttccggcgcggtggccggtggt-gcaccaccgcgccggagttt 18954665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 23755438 - 23755491
Alignment:
Q  81 cttcatttttacaaagaaacttctcacaaaaaatgttttactcacttctctctc 134  Q
    ||||||||| ||||| |||| |||||| ||||||| ||| ||||||||||||||    
T  23755438 cttcattttgacaaaaaaacctctcactaaaaatgctttgctcacttctctctc 23755491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 23755544 - 23755577
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccg 217  Q
    |||||||||||||||||||||||||| |||||||    
T  23755544 ttttccggcgcggtggccggtggtggtaccaccg 23755577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 35875071 - 35874971
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatccttttcttcatac 283  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| |||||  |||||||||| | |||||    
T  35875071 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttggacatccttttttgcatac 35874972  T
Q  284 t 284  Q
    |    
T  35874971 t 35874971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 35890140 - 35890040
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatccttttcttcatac 283  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| |||||  |||||||||| | |||||    
T  35890140 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttggacatccttttttgcatac 35890041  T
Q  284 t 284  Q
    |    
T  35890040 t 35890040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 521 - 646
Target Start/End: Original strand, 5488550 - 5488675
Alignment:
Q  521 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 620  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||    
T  5488550 tccggtctggcttgaactcgtggttgattcacgaccggttgggatttgttgttttttccgtcgattttgaatcggaagaaaaaggttgtgtgattattgt 5488649  T
Q  621 gtaaaagaaagaagcgaaaatagtgt 646  Q
    ||||||||||||||||||||||||||    
T  5488650 gtaaaagaaagaagcgaaaatagtgt 5488675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 15391006 - 15391110
Alignment:
Q  439 cgttgttggatgatacggtttcaccttcttctctttcacgttcggtccgaaccttgatgttacggttccgtttgtgctttgttccggtccggcttgaact 538  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  15391006 cgttgttggatgattcggttgcaccttcttctctttcacgtccggtccgaaccttgatgttatggttccgtttgtactttgttccggtccggtttgaact 15391105  T
Q  539 cgttg 543  Q
    |||||    
T  15391106 cgttg 15391110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 3042445 - 3042353
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||  | ||||||| ||||||| |||||||||||||||||    
T  3042445 gttttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaaactttttacgtttttaaacatcctttt 3042353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 16587852 - 16587761
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||  | ||||||| |||||||||||||||||||||||||    
T  16587852 ttttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactcttccgattcaaaaactttttacatttttaaacatcctttt 16587761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 16607528 - 16607619
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||  | ||||||| |||||||||||||||||||||||||    
T  16607528 ttttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactcttccgattcaaaaactttttacatttttaaacatcctttt 16607619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 24919243 - 24919129
Alignment:
Q  161 gcttcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatt 260  Q
    ||||||||||||||||| |    ||||||||||||||||||||  |||||||||||| |||||||||  |||||||||  | ||||||| ||||||||||    
T  24919243 gcttcttctccgatgagattgaattttccggcgcggtggccggcagtggcaccaccgcgccggagttcgaaactcctccgattcaaaaactttttacatt 24919144  T
Q  261 tttaaacatcctttt 275  Q
    |||||||||||||||    
T  24919143 tttaaacatcctttt 24919129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 20216068 - 20215977
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |  ||||| |||  | ||||||| |||||||||||||||||||||||||    
T  20216068 ttttccggcgcggtggccggcggtggcaccaccgcgccggagctcaaaacttctccgattcaaaaactttttacatttttaaacatcctttt 20215977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 22110089 - 22109998
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |  ||||| |||  | ||||||| |||||||||||||||||||||||||    
T  22110089 ttttccggcgcggtggccggcggtggcaccaccgcgccggagctcaaaacttctccgattcaaaaactttttacatttttaaacatcctttt 22109998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 27048675 - 27048730
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27048675 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 27048730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 27058919 - 27058974
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27058919 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 27058974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 30996948 - 30996997
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30996948 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 30996997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 17092468 - 17092559
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||| ||||||| |||||| |||||  |||||||||  |||||||||  | ||||||| ||||||||||||| |||||||||||    
T  17092468 ttttccggcgcgatggccggcggtggcgccaccacgccggagttcaaaactcctccgattcaaaaattttttacatttttgaacatcctttt 17092559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 24296429 - 24296519
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||| ||||||||||||  |||||||||  |||||||||  | || ||   |||||||||||||||||||||||||    
T  24296429 ttttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattc-aattttttttacatttttaaacatcctttt 24296519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 24310460 - 24310550
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||| ||||||||||||  |||||||||  |||||||||  | || ||   |||||||||||||||||||||||||    
T  24310460 ttttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattc-aattttttttacatttttaaacatcctttt 24310550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 877419 - 877509
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||| |||||||| |||||||||||||| | |||||||  ||||||| || ||||||||||||||| ||| ||||| ||||| ||||    
T  877419 ttccggcgtggtggccgatggtggcaccaccgcgtcggagttcaaaactccgtccaaatcaaaaagttttcacaattttagacatcatttt 877509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 19827582 - 19827626
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  19827582 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 19827626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 5488166 - 5488218
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc 236  Q
    ||||||||| |||||||||||||||||||||||| |||||||| | |||||||    
T  5488166 ttttccggcacggtggccggtggtggcaccaccgcgccggagtgtgaaactcc 5488218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 5995736 - 5995692
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    |||||||||| |||||||||||||||||||||||| |||||||||    
T  5995736 gttttccggcacggtggccggtggtggcaccaccgcgccggagtt 5995692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 15390685 - 15390729
Alignment:
Q  188 ccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  15390685 ccggcgcggtggccggtgttggcaccaccgcgccggagtttcaaa 15390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 1141806 - 1141767
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggag 225  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  1141806 ttccggcgcggtggccggtggtggcaccgccgcgccggag 1141767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 24737523 - 24737449
Alignment:
Q  202 ggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||| |||||||||  ||||||| || |||||||| |||||| ||  ||||| ||||||||||    
T  24737523 ggtggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaatagttttcacggttttagacatcctttt 24737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 32215995 - 32215881
Alignment:
Q  161 gcttcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatt 260  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||  |||| ||||  | ||| ||| ||||||||||    
T  32215995 gcttcttctccgatgagatcatgttttccagcgcggtggccggtggtggcaccaccgcgccggagttcgaaacccctccgattcataaactttttacatt 32215896  T
Q  261 tttaaacatcctttt 275  Q
    |||||||||||||||    
T  32215895 tttaaacatcctttt 32215881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 24923335 - 24923243
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||| ||||||||||||||  |||||| |||||||||| |||||||||  | ||||||| |||||||||||||||||||||||||    
T  24923335 gttttccggcgcagtggccggtggtggtgccaccgcgccggagttttaaactcctccgattcaaaaactttttacatttttaaacatcctttt 24923243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 17141916 - 17141824
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||| ||| |||||  | ||||||| ||||||| |||||||||||||||||    
T  17141916 gttttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaaatcctccgattcaaaaactttttacgtttttaaacatcctttt 17141824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 26447261 - 26447171
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||| |||||||||||| ||||||||||||||||||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  26447261 ttccagcgcggtggccgatggtggcaccaccgtgccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 26447171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 638076 - 638158
Alignment:
Q  194 cggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||| |||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  638076 cggtggccggtggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 4749044 - 4749093
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4749044 gttttccggcgcggtggccggtggtggcaccaccgcgccggagttccaaa 4749093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 12997579 - 12997535
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  12997579 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtt 12997535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 772329 - 772264
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaa 249  Q
    |||||||||||||||||||||||||||||| ||| |||||||| | ||||||| | || |||||||    
T  772329 ttttccggcgcggtggccggtggtggcacctccgcgccggagtgtgaaactccgccaattcaaaaa 772264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 5405293 - 5405386
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggag-tttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||| || ||| ||||||| ||| ||||||||||   ||||||| ||||||| ||||   ||||||||||    
T  5405293 gttttccggcgcggtggccggtggtggcgccgccgcgccggagttttaaaactcctctgtttcaaaaattttttacgttttcttacatcctttt 5405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 21531355 - 21531399
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  21531355 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 21531399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 20866841 - 20866893
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc 236  Q
    |||||||||||||||||||||||||||||||||| ||| |||| | |||||||    
T  20866841 ttttccggcgcggtggccggtggtggcaccaccgcgccagagtgtgaaactcc 20866893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 52296781 - 52296690
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||| |||||||||||||||||||||||| | |||||||||  ||||||| |  | |||||||    |||| |||||||||||||||||    
T  52296781 ttttccgacgcggtggccggtggtggcaccactgcgccggagttcaaaactccgccgattcaaaaacaaattacctttttaaacatcctttt 52296690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 48077685 - 48077653
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccacc 216  Q
    |||||||||||||||||||||||||||||||||    
T  48077685 ttttccggcgcggtggccggtggtggcaccacc 48077653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 17008342 - 17008297
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||||||  | ||| ||||||||||    
T  17008342 gttttccggcgcggtggccggtggtggcgtcgccgcgccggagttt 17008297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 17022306 - 17022261
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||||||  | ||| ||||||||||    
T  17022306 gttttccggcgcggtggccggtggtggcgtcgccgcgccggagttt 17022261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 64670 - 64762
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||    
T  64670 gttttccggcgcggtggtcgttggtggcaccaccgcgccggagtttcaacctcctctaaatcaaaaattgtttacgtttttaaacatcctttt 64762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 17663526 - 17663679
Alignment:
Q  81 cttcatttttaca-aagaaacttctcac--aaaaaatgttttactcacttctctctcaacaaaacaaacagccgccccc-tcttgcttcttctccgatga 176  Q
    ||||||||||||| |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| | |  | |||||||||  ||    
T  17663526 cttcatttttacataagagacttctcactaaaaaaatgtttt-ctcacttctctctcaacaaaacaaacagccgcccccttatatcatcttctccggcga 17663624  T
Q  177 gttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |     ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17663625 gacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 17682682 - 17682835
Alignment:
Q  81 cttcatttttaca-aagaaacttctcac--aaaaaatgttttactcacttctctctcaacaaaacaaacagccgccccc-tcttgcttcttctccgatga 176  Q
    ||||||||||||| |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| | |  | |||||||||  ||    
T  17682682 cttcatttttacataagagacttctcactaaaaaaatgtttt-ctcacttctctctcaacaaaacaaacagccgcccccttatatcatcttctccggcga 17682780  T
Q  177 gttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |     ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17682781 gacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 26872596 - 26872703
Alignment:
Q  121 ctcacttctctctcaacaaaacaaacagccgccccctcttg-cttcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtg 219  Q
    ||||||||||||| |||||||||||||||||||||||  |  | |||||||||  ||| |   ||||||||||||||||||||||||||||||||||| |    
T  26872596 ctcacttctctcttaacaaaacaaacagccgcccccttatatcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcg 26872695  T
Q  220 ccggagtt 227  Q
    ||||||||    
T  26872696 ccggagtt 26872703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 4836550 - 4836460
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||| ||||||||||||||||||||||| |||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  4836550 ttccggcgtggtggccggtggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 4836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 4841995 - 4841905
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||| ||||||||||||||||||||||| |||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  4841995 ttccggcgtggtggccggtggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 4841905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 4838715 - 4838807
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |  | |||||||    |||| |||||||||||||||||    
T  4838715 gttttccggcgcggtggccggtggtggcaccaccgcgccggagttcaaaactccgccgattcaaaaacaaattacctttttaaacatcctttt 4838807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 2750241 - 2750331
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||| ||||||||||||||||||| ||||||| |||||||||  ||||||| || ||||||||||||||| |   ||||| ||||||||||    
T  2750241 ttccagcgcggtggccggtggtggaaccaccgcgccggagttcaaaactccgtccaaatcaaaaagttttcatggttttagacatcctttt 2750331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 23091597 - 23091551
Alignment:
Q  192 cgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 238  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  23091597 cgcggtggccggtggtggcaccaccgcgccggagttttaaactcctc 23091551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 36577971 - 36578012
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  36577971 ttccggcgcggtggccggtggtggcaccaccgcgccggagtt 36578012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 26875117 - 26875161
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  26875117 gttttccgacgcggtggccggtggtggcaccaccgcgccggagtt 26875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 31411963 - 31411814
Alignment:
Q  81 cttcatttttacaaa-gaaacttctcac--aaaaaatgttttactcacttctctctcaacaaaacaaacagccgccccc-tcttgcttcttctccgatga 176  Q
    ||||||||||||||| || |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| | |  | |||||||||  ||    
T  31411963 cttcatttttacaaaagagacttctcactaaaaaaatgtttt-ctcacttctctctcaacaaaacaaacagccgcccccttatatcatcttctccggcga 31411865  T
Q  177 gttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    | |   |||||||||||||||||||||||||||||||||||  ||||||||    
T  31411864 gatagtgttttccggcgcggtggccggtggtggcaccaccgcaccggagtt 31411814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 29185268 - 29185320
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29185268 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 29185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 31549533 - 31549586
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcct 237  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  31549533 ttttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcct 31549586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 29189294 - 29189206
Alignment:
Q  187 tccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||||||||||||||| ||| |||||  ||||  |||  | ||| ||| |||||||||||||||||||||||||    
T  29189294 tccggcgcggtggccggtggtggcaccaccgcgcctgagttcaaaaccactccgattcacaaactttttacatttttaaacatcctttt 29189206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 23568517 - 23568473
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||    
T  23568517 gttttccggcgcggtggccggtggtggcatcaccgcgccggagtt 23568473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 31422766 - 31422722
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  31422766 gttttccggcgcggtggccggtggtggcaccactgcgccggagtt 31422722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 20371908 - 20371949
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  20371908 ttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 20371949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 20397632 - 20397673
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  20397632 ttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 20397673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 2826915 - 2826851
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaa 249  Q
    ||||| ||| |||||||||||||||||||||| |||||||||  ||||||| || ||||||||||    
T  2826915 ttccgacgcagtggccggtggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaaaa 2826851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 41669341 - 41669250
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  41669341 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcaaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 41669250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 41684148 - 41684057
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  41684148 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcaaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 41684057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 8949134 - 8949167
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccg 217  Q
    ||||||| ||||||||||||||||||||||||||    
T  8949134 ttttccgacgcggtggccggtggtggcaccaccg 8949167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 6008 - 6122
Alignment:
Q  161 gcttcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatt 260  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||  |||| | ||  | ||| ||| |||||||| |    
T  6008 gcttcttctccgatgagatcatgtttaccggcgcggtggccggtggtggcaccaccgtgccggagttcgaaacccttccgattcacaaactttttacaat 6107  T
Q  261 tttaaacatcctttt 275  Q
    |||||||||||||||    
T  6108 tttaaacatcctttt 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 2502 - 2594
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||  | ||||||| |||||||||||||||||||||||||    
T  2502 gttttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaaactttttacatttttaaacatcctttt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 19558 - 19468
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | ||||||| |||||||||||||||||||||||||    
T  19558 tttccggcgcggtggccggcggtggcaccaccgcgccggagttctaaactcctccgattcaaaaactttttacatttttaaacatcctttt 19468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 17515789 - 17515845
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17515789 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 17515845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 17537425 - 17537369
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17537425 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 17537369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 559882 - 559938
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  559882 gttttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 559938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 569791 - 569847
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  569791 gttttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 569847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 4185226 - 4185136
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | ||||||| |||||||| ||| ||| ||||||||    
T  4185226 tttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaactttttacactttcaaatatcctttt 4185136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 38411829 - 38411779
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaact 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38411829 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaact 38411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 27967386 - 27967434
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27967386 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 27976839 - 27976887
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27976839 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27976887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 5200600 - 5200647
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5200600 tttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5200647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 5209729 - 5209776
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5209729 tttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5209776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 16911192 - 16911248
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||    
T  16911192 gttttccggcgcggtggccggtggtggcaccaccacgctggaatttcaaactcctct 16911248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 15974785 - 15974735
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc 236  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  15974785 ttccggcgcggtggccggtggtggcaccaccgcgccggagttcaaaactcc 15974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 1887938 - 1887982
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  1887938 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 1887982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 1902039 - 1902083
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  1902039 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 1902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 16544258 - 16544205
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    |||| |||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  16544258 ttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctct 16544205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 16621404 - 16621457
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    |||| |||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  16621404 ttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctct 16621457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 24187137 - 24187181
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagttt 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  24187137 gttttccggcgcggtggccggtggt-gcaccaccgtgccggagttt 24187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 16474424 - 16474471
Alignment:
Q  191 gcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 238  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||    
T  16474424 gcgcggtggccgatggtggcaccaccgcgccggagttttaaactcctc 16474471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 48305444 - 48305534
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||| ||| |||||  ||||||||||||| |||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  48305444 ttccggcacggcggccgtcggtggcaccaccgcgccggagttcaaaactccgtccaaatcaaaaagttttcacggttttagacatcctttt 48305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 18538074 - 18537983
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  18538074 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 18537983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 18548582 - 18548491
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  18548582 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 18548491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 5167808 - 5167708
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatccttttcttcatac 283  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| |||||  |||||||||| | |||||    
T  5167808 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttggacatccttttttgcatac 5167709  T
Q  284 t 284  Q
    |    
T  5167708 t 5167708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 18788194 - 18788155
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagt 226  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  18788194 ttccggcacggtggccggtggt-gcaccaccgtgccggagt 18788155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 32090844 - 32090884
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccgga 224  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  32090844 tttttcggcgcggtggctggtggtggcaccaccgtgtcgga 32090884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 18750250 - 18750196
Alignment:
Q  183 gttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcct 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18750250 gttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcct 18750196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 41745803 - 41745953
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa-ctcctctaaatcaaaaagtttttacatttttaaacatccttttcttcatact 284  Q
    |||||||  |||||||||||||| |||| |||||||||||||||||| |||| |    |||||||    |||  |||||||||||||||||||||||||     
T  41745803 ttccggcatggtggccggtggtg-caccgccgtgccggagtttcaaaactccgccgtttcaaaaataaattatctttttaaacatccttttcttcatacg 41745901  T
Q  285 tttcgaaaatccacttagttttcacaaacaatcacgaaataagcctagatct 336  Q
    |||| ||||||||||||||||| || ||||| ||| ||| || |||||||||    
T  41745902 tttcaaaaatccacttagtttttacgaacaaacaccaaacaatcctagatct 41745953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 18597139 - 18597049
Alignment:
Q  185 tttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  |||||||||  | ||||||| |||||||| ||| ||| ||||||||    
T  18597139 tttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaactttttacactttcaaatatcctttt 18597049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 179827 - 179914
Alignment:
Q  189 cggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||| ||||||||||||||||||||| |||||||||  ||||||| || ||||||||||||||| ||  ||||| ||||||||||    
T  179827 cggcgcgatggccggtggtggcaccaccgcgccggagttcaaaactccatccaaatcaaaaagttttcacggttttagacatcctttt 179914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 13463879 - 13463836
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtt 227  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  13463879 ttttccggcgcggtggccggtggtggcaccaccgcgccggagtt 13463836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 8402158 - 8402068
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaac-tcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||||||||||   ||||||||  |||| || || ||||||||||||||| ||  |||||  |||||||||    
T  8402158 ttccggcgcggtggccggtggtggcaccaccacaccggagttcaaaacttcatccaaatcaaaaagttttcacggttttaggcatcctttt 8402068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 3650842 - 3650803
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggag 225  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  3650842 ttccggcgcggtggccggtggtggcaccgccgcgccggag 3650803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 11949224 - 11949174
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc 236  Q
    ||||| ||||||||||||| |||||||||||||| | |||||| |||||||    
T  11949224 ttccgacgcggtggccggtagtggcaccaccgtgtctgagtttaaaactcc 11949174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 20500935 - 20500897
Alignment:
Q  201 cggtggtggcaccaccgtgccggagtttcaaactcctct 239  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  20500935 cggtggtggcaccaccacgccggagtttcaaactcctct 20500897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 35197987 - 35197954
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccg 217  Q
    |||||||||||||||||| |||||||||||||||    
T  35197987 ttttccggcgcggtggcctgtggtggcaccaccg 35197954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 22348261 - 22348345
Alignment:
Q  192 cgcggtggccggtggtggcaccaccgtgccggagtttcaaactcc-tctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||||||||||||||||||||| | | |||||||  ||||||| || ||||||||| ||||| ||  ||||| ||||| ||||    
T  22348261 cgcggtggccggtggtggcaccactgcgtcggagttcaaaactccgtccaaatcaaaatgttttcacggttttagacatcatttt 22348345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 548 - 441
Alignment:
Q  121 ctcacttctctctcaacaaaacaaacagccgccccctcttg-cttcttctccgatgagttcacgttttccggcgcggtggccggtggtggcaccaccgtg 219  Q
    ||||||||||||| |||||||||||||||||||||||  |  | |||||||||  ||| |   |||||||||||||||||||||| |||||||||||| |    
T  548 ctcacttctctcttaacaaaacaaacagccgcccccttatatcatcttctccggcgagatagtgttttccggcgcggtggccggtagtggcaccaccgcg 449  T
Q  220 ccggagtt 227  Q
    ||||||||    
T  448 ccggagtt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 24536 - 24491
Alignment:
Q  187 tccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  24536 tccggcgcggtggccggtggtggcaccaccgcaccggagtttcaaa 24491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 4314 - 4223
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    |||||| |||||||| |||| || |||||||||| |||||||||  |||||||||  | |||||    ||||||||||||||||||||||||    
T  4314 ttttccagcgcggtgaccggcggcggcaccaccgcgccggagttcgaaactcctccgattcaaatttgttttacatttttaaacatcctttt 4223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 11890 - 11845
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaa 232  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11890 ttccggcacggtggccggtggtg-caccaccgtgccggagtttcaaa 11845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2141 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 197 - 158
Alignment:
Q  186 ttccggcgcggtggccggtggtggcaccaccgtgccggag 225  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  197 ttccggcgcggtggccggtggtggcaccgccgcgccggag 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2066 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold2066
Description:

Target: scaffold2066; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 805 - 896
Alignment:
Q  184 ttttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctctaaatcaaaaagtttttacatttttaaacatcctttt 275  Q
    ||||||||||||| || ||| |||||| || ||| |||||||||  ||||| |||  | ||||||| ||||||| ||||| |||||||||||    
T  805 ttttccggcgcggcggacggcggtggcgcctccgcgccggagttcgaaacttctccgattcaaaaactttttacgtttttgaacatcctttt 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University