View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_high_20 (Length: 236)
Name: NF17787_high_20
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 45688366 - 45688183
Alignment:
| Q |
1 |
ctaaatctttacagttgttttacagaggtttctatgggaagcttggcaggatctgacccttataatattgattatagcagctgtagtatcattagtgctt |
100 |
Q |
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| T |
45688366 |
ctaaatctttacagttgttttacagaggtttctatgggaagcttggcaggatctgacccttataatattgattatagcagctgtggtatcattagtgctt |
45688267 |
T |
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| Q |
101 |
ggagtatttgaaaaggtgaactgcatatacataacaagaaaaagtgaactgattgtattttgttcacaatagatattcactgta |
184 |
Q |
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| T |
45688266 |
ggagtatttgaaaaggtgaactgcatatacataacaagaaaaagtgaactgattgtattttgttcacaatagatattcactgta |
45688183 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 1437992 - 1438076
Alignment:
| Q |
19 |
tttacagaggtttctatgggaagcttggcaggatctgacccttataatattgattatagcagctgtagtatcattagtgcttgga |
103 |
Q |
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| T |
1437992 |
tttacagaggtttttatgggaggcttggcaagatctgactctcataatattgattgtagcagctgtagtgtcattggtgcttgga |
1438076 |
T |
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