View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_10 (Length: 519)
Name: NF17787_low_10
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 2 - 503
Target Start/End: Complemental strand, 33158324 - 33157823
Alignment:
| Q |
2 |
gcatctccaacaatatggactgcaactagcttttatttatctaacttaaatatggttctctaagaggagacaacaagcattagcatgccaataacatatt |
101 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33158324 |
gcatctcctccaatatggactgcaactagcttttatttatctaacttaaatatggttctccaagaggagacaacaagcattagcatgccaataacatatt |
33158225 |
T |
|
| Q |
102 |
ctattgaagctacttctgcggcggaacactttgatccactcaaagcaaaaaattgcaatggtgatctatgtcaccttctaaaaatagaagtttactgtcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158224 |
ctattgaagctacttctgcggcggaacactttgatccactcaaagcaaaaaattgcaatggtgatctatgtcaccttctaaaaatagaagtttactgtcc |
33158125 |
T |
|
| Q |
202 |
tcttcgtcctcacaacttcgtgagtgatgtcggttcgacaaaaacaatcagaaccaaatatgagtgttttaaaactcaaataatatttgttttctttgtt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
33158124 |
tcttcgtcctcacaacttcgtgagtgatgtcggttcgacaaaaacaatcagaaccaaatatgagtgctttaaaactcaaataatatttattttctttgtt |
33158025 |
T |
|
| Q |
302 |
ttagtcaaaccaacatcgatcaaatcatccttgtggtcgaaccaacaccgatcaagtcatccttgtgaagatgatgagcattgtgatcttctacttttga |
401 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158024 |
ttagtcaaaccaacatcgatcaagtcatccttgtggtcgaaccaacaccgatcaggtcatccttgtgaagatgatgagcattgtgatcttctacttttga |
33157925 |
T |
|
| Q |
402 |
cttcgtatgtatgtcgttgttggagttttatacgattttcaaatacttgttcataataaaacatctattaaggtgatctagggtaaaatccacccatctt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33157924 |
cttcgtatgtatgtcgttgttggagttttatacgattttcaaatacttgttcataataaaacatctattaaggtgatctagggtaaaatccacccatctt |
33157825 |
T |
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| Q |
502 |
tt |
503 |
Q |
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|| |
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| T |
33157824 |
tt |
33157823 |
T |
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