View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17787_low_11 (Length: 506)

Name: NF17787_low_11
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17787_low_11
NF17787_low_11
[»] chr3 (4 HSPs)
chr3 (11-209)||(10865988-10866187)
chr3 (77-209)||(41788019-41788152)
chr3 (433-483)||(10866410-10866460)
chr3 (299-338)||(10866276-10866315)
[»] scaffold0632 (1 HSPs)
scaffold0632 (78-210)||(1759-1893)
[»] chr8 (1 HSPs)
chr8 (77-209)||(1331648-1331782)
[»] chr5 (2 HSPs)
chr5 (78-207)||(21490629-21490759)
chr5 (80-207)||(34870911-34871040)
[»] chr1 (1 HSPs)
chr1 (76-117)||(48255435-48255476)
[»] chr2 (1 HSPs)
chr2 (26-74)||(22110987-22111035)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 10865988 - 10866187
Alignment:
Q  11 agaagcaaaggtcaccctctttgactatgcaacatcattatccaaatgaggcaaaactttcaaattctaagagcaactccaatgctagttctagagagtg 110  Q
    ||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10865988 agaagcaaagggcctcctctttgactatgcaacaccattatccaaatgaggcaaaactttcaaattctaagagcaactccaatgctagttctagagagtg 10866087  T
Q  111 ttcttgatact-aaaaacaaattcttgttttctttaccattgcagatggatgatgtggaatcgaggttggagaactgttttctgtggagaacacgttcca 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10866088 ttcttgatactcaaaaacaaattcttgttttctttaccattgcagatggatgatgtggaatcgaggttggagaactgttttctgtggagaacacgttcca 10866187  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 41788019 - 41788152
Alignment:
Q  77 ctaagagcaactccaatgctagttctagagagtgttcttgatact-aaaaacaaattcttgttttctttaccattgcagatggatgatgtggaatcgagg 175  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||  |||    
T  41788019 ctaagagcaactccaatcctagttctaaaaagtgttcttgatactcaaaaataagttcttgttttctttaccattggagatggatgatgtggaattcagg 41788118  T
Q  176 ttggagaactgttttctgtggagaacacgttcca 209  Q
     |||||||||||| | |||| |||||| ||||||    
T  41788119 gtggagaactgttctatgtgaagaacatgttcca 41788152  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 10866410 - 10866460
Alignment:
Q  433 ttccctttaaatatgagaactgagattcccctctcaatctgagttttgagc 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10866410 ttccctttaaatatgagaactgagattcccctctcaatctgagttttgagc 10866460  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 10866276 - 10866315
Alignment:
Q  299 ttccaaatccaaaatacacaactagtaattttcacaatta 338  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10866276 ttccaaatccaaaatacacaactagtaattttcacaatta 10866315  T

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Target: scaffold0632 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 1893 - 1759
Alignment:
Q  78 taagagcaactccaatgctagttctagagagtgttcttgatact-aaaaacaaattcttgt-tttctttaccattgcagatggatgatgtggaatcgagg 175  Q
    ||||||||||| ||||||||||||||||  |||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||    
T  1893 taagagcaacttcaatgctagttctagactgtgttcttgatactcaaaaacaagttcttgtgtttctttaccattggagatggatgatgtggaatccagg 1794  T
Q  176 ttggagaactgttttctgtggagaacacgttccaa 210  Q
     |||||||||||| | |||| |||||| |||||||    
T  1793 atggagaactgttctatgtgaagaacatgttccaa 1759  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 1331648 - 1331782
Alignment:
Q  77 ctaagagcaactccaatgctagttctagagagtgttcttgata-ctaaaaa-caaattcttgttttctttaccattgcagatggatgatgtggaatcgag 174  Q
    |||||||||||||||||||||||||||||  |||||||||||| || |||| ||| ||||||||||||||||||||| ||||||||||||||||||  ||    
T  1331648 ctaagagcaactccaatgctagttctagacggtgttcttgataactcaaaagcaagttcttgttttctttaccattggagatggatgatgtggaattcag 1331747  T
Q  175 gttggagaactgttttctgtggagaacacgttcca 209  Q
    | |||||||||| | | |||| |||||| ||||||    
T  1331748 ggtggagaactgctctatgtgaagaacatgttcca 1331782  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 21490629 - 21490759
Alignment:
Q  78 taagagcaactccaatgctagttctagagagtgttcttgatactaaaaacaaa-ttcttgttttctttaccattgcagatggatgatgtggaatcgaggt 176  Q
    |||||||||||||||||||||||| | |  |||||||||| ||| ||||| || |||||| |||||||||||||| ||||||||||||||||||| | ||    
T  21490629 taagagcaactccaatgctagttccacacggtgttcttgaaactcaaaactaagttcttgctttctttaccattggagatggatgatgtggaatccatgt 21490728  T
Q  177 tggagaactgttttctgtggagaacacgttc 207  Q
    |||||||| ||| | ||||||||||||||||    
T  21490729 tggagaaccgttctatgtggagaacacgttc 21490759  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 34870911 - 34871040
Alignment:
Q  80 agagcaactccaatgctagttctagagagtgttcttgatact--aaaaacaaattcttgttttctttaccattgcagatggatgatgtggaatcgaggtt 177  Q
    ||||||||| ||| | |||||||| | | ||||||||| |||  |||||||| |||||| ||||||| | |||| ||||| |||||||||| || |||||    
T  34870911 agagcaactacaacggtagttctacacattgttcttgaaactcaaaaaacaagttcttgctttctttgctattggagatgaatgatgtggactccaggtt 34871010  T
Q  178 ggagaactgttttctgtggagaacacgttc 207  Q
    ||||||||||| ||||||||||||| ||||    
T  34871011 ggagaactgttctctgtggagaacatgttc 34871040  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 48255435 - 48255476
Alignment:
Q  76 tctaagagcaactccaatgctagttctagagagtgttcttga 117  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  48255435 tctaagagcaactccaatgctagttctacacattgttcttga 48255476  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22110987 - 22111035
Alignment:
Q  26 cctctttgactatgcaacatcattatccaaatgaggcaaaactttcaaa 74  Q
    ||||||||||||||||||  |||||||||||||||| |||  |||||||    
T  22110987 cctctttgactatgcaacgacattatccaaatgaggtaaagatttcaaa 22111035  T

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