View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_14 (Length: 458)
Name: NF17787_low_14
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 5 - 442
Target Start/End: Original strand, 29982915 - 29983352
Alignment:
| Q |
5 |
gctacattattcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaaaatactagcaaaaggac |
104 |
Q |
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| T |
29982915 |
gctacattagtcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaaaatactagcaaaaggac |
29983014 |
T |
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| Q |
105 |
cttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcagttaaaaaactacaacccaaaaccagtgtcaatgt |
204 |
Q |
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| T |
29983015 |
cttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcagttaaaaaactacaacccaaaactagtgtcaatgt |
29983114 |
T |
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| Q |
205 |
gatgcaaatgtaaatctccttcacaggttcaccctcagggcaatgtttagccattatagcaagtaaaggctttatcgcaaaaataacaaagaggataaaa |
304 |
Q |
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| T |
29983115 |
gatgcaaatgtaaatctccttcacaggttcaccctcagggcaacgtttagccattatagcaagtaagggctttatggcaaaaataacaaacaggataaaa |
29983214 |
T |
|
| Q |
305 |
ccaacaccacaaagtaggacccataaagatacaagaggggaagtgttggcgcctgaaagagctactgcaagagcaagaagtatccaagcagcgacgtcat |
404 |
Q |
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| T |
29983215 |
ccaacaccacaaagtaggacccataaagatacaagaggggaagtgttggcgcctgaaagagctactgcaagagcaagaagtatccaagcagcgacgtcat |
29983314 |
T |
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| Q |
405 |
tgacagcagcagctgacattgccatccgaccaacatcg |
442 |
Q |
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| T |
29983315 |
tgacagcagcagctgacattgccatccgaccaacatcg |
29983352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 51403855 - 51403659
Alignment:
| Q |
62 |
acaagatcctcaatcttctcagtcaaaatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaa |
161 |
Q |
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| T |
51403855 |
acaagatcttcaatcttctcaattaaaacaccagcaaaaggaccatctttaggcataattataccaataacaaaagcaccaaataatgcatgaattccaa |
51403756 |
T |
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| Q |
162 |
tagtatcagttaaaaaactacaacccaaaaccagtgtcaatgtgatgcaaatgtaaatctccttcacaggttcaccctcagggcaatgtttagccat |
258 |
Q |
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| T |
51403755 |
tagtatcagtaacaaaactacaagccaaaaccaatgtcaatgtgatacaaatgtaaagctctttaacaggttcaccctcaggggaacgcttagccat |
51403659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 51403543 - 51403476
Alignment:
| Q |
374 |
agagcaagaagtatccaagcagcgacgtcattgacagcagcagctgacattgccatccgaccaacatc |
441 |
Q |
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| T |
51403543 |
agagcaagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatc |
51403476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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