View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17787_low_16 (Length: 407)

Name: NF17787_low_16
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17787_low_16
NF17787_low_16
[»] chr7 (1 HSPs)
chr7 (68-361)||(42882341-42882634)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 68 - 361
Target Start/End: Original strand, 42882341 - 42882634
Alignment:
Q  68 aacagaaatgtggaggatttacagtgaaagttgagcatgactctttgagtcattttaatatagtggatgctgattttggagacatctatgttagatttga 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42882341 aacagaaatgtggaggatttacagtgaaagttgagcatgactctttgagtcattttaatatagtggatgctgattttggagacatctatgttagatttga 42882440  T
Q  168 agaagtgctcaattccatcataggtgagtgttcttattttcaaaataaattgccaagtcggatgaagttatttagtagaggggtgtacattacattacat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42882441 agaagtgctcaattccatcataggtgagtgttcttattttcaaaataaattgccaagtcggatgaagttatttagtagaggggtgtacgttacattacat 42882540  T
Q  268 gatatttaannnnnnngacgcaatgttaagctacatgatgaatatcaattaaactgtannnnnnnctattttgcattcctgatcgaagtgggtt 361  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||    
T  42882541 gatatttaatttttttgacgcaatgttaagctacatgatgaatatcaattaaactgtatttttttctattttgcattcatgatcgaagtgggtt 42882634  T

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