View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_18 (Length: 391)
Name: NF17787_low_18
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 132 - 374
Target Start/End: Original strand, 41852414 - 41852656
Alignment:
| Q |
132 |
taaggattctgctgataccccgtagttttcttgggggtagcagcactaatcctcatcggtctagtagaacaataaacaccattcatctccgacatagcac |
231 |
Q |
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| T |
41852414 |
taaggattctgctgataccccgtagttttcttgggggtagcagcactaatcctcatcggtctagtagaacaataaacaccattcatctccgacatagcac |
41852513 |
T |
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| Q |
232 |
gattcctctcactctcatcactaaatttaacaaacccataccccttactcctcccagtattcggatcagtcacaaccttcgccccacgaacactcccata |
331 |
Q |
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| T |
41852514 |
gattcctctcactctcatcactaaatttaacaaacccataccccttactcctcccagtattcggatcagtcacaaccttcgccccacgaacactcccata |
41852613 |
T |
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| Q |
332 |
atgagtcctaaaagtctcttgcagtaaataatccgtaacatca |
374 |
Q |
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| T |
41852614 |
atgagtcctaaaagtctcttgcagtaaataatccgtaacatca |
41852656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 41852313 - 41852382
Alignment:
| Q |
10 |
attatactaagcacttaattatactaattatcctaattatnnnnnnngtgtagggttttgttataccttt |
79 |
Q |
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| T |
41852313 |
attatactaagcacttaattatactaattatcctaattataaaaaaagtgtagggttttgttataccttt |
41852382 |
T |
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