View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_19 (Length: 379)
Name: NF17787_low_19
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 33171059 - 33171343
Alignment:
| Q |
1 |
ttatatctaaaatgtgcttttagttttacacttttactgaatctcattgttctgtgtgggaaaaggtcatgtagttggtttctcactttaatttctcgtt |
100 |
Q |
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| T |
33171059 |
ttatatctaaaatgtgcttttagttttacacttttactgaatctcattgttctgtgtgggaaaaggtcatgtagttggtttctcactttaatttctcgtt |
33171158 |
T |
|
| Q |
101 |
tctaatttctaataatgacacttattttgacgtgaggtagtggttatatctactatacatgattccaaatcaattgaacacttcaaacgattctattaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33171159 |
tctaatttctaataatgacacttattttgacgtgaggtagtggttatatctactatacatgattccaaatcaattgaacgtttcaaacgattctattaag |
33171258 |
T |
|
| Q |
201 |
agcagttattattttgttttcttctttgagtgtatgcccttgccctgactgcccaagattcccatccaattaagcacctgtaatg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171259 |
agcagttattattttgttttcttctttgagtgtatgcccttgccctgactgcccaagattcccatccaattaagcacctgtaatg |
33171343 |
T |
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