View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17787_low_22 (Length: 318)

Name: NF17787_low_22
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17787_low_22
NF17787_low_22
[»] chr6 (11 HSPs)
chr6 (52-296)||(16406448-16406692)
chr6 (53-149)||(17534873-17534969)
chr6 (52-147)||(32788801-32788896)
chr6 (53-172)||(32283541-32283660)
chr6 (53-174)||(606988-607109)
chr6 (52-100)||(29646495-29646543)
chr6 (64-177)||(32166367-32166481)
chr6 (52-171)||(2816894-2817014)
chr6 (52-175)||(7177295-7177419)
chr6 (57-116)||(7581103-7581163)
chr6 (52-175)||(7865301-7865425)
[»] chr4 (25 HSPs)
chr4 (52-178)||(31852346-31852472)
chr4 (52-174)||(11294785-11294907)
chr4 (52-175)||(51890797-51890920)
chr4 (77-178)||(45139853-45139954)
chr4 (52-174)||(3784913-3785034)
chr4 (53-178)||(49264523-49264648)
chr4 (53-172)||(29406360-29406479)
chr4 (52-163)||(40486453-40486564)
chr4 (67-181)||(23132769-23132882)
chr4 (53-175)||(42002306-42002428)
chr4 (52-166)||(46791155-46791269)
chr4 (85-174)||(42044026-42044115)
chr4 (76-175)||(5326491-5326590)
chr4 (55-169)||(2629585-2629699)
chr4 (53-175)||(23924820-23924942)
chr4 (130-176)||(41621292-41621338)
chr4 (52-175)||(38848067-38848191)
chr4 (127-175)||(52015491-52015539)
chr4 (54-149)||(9764972-9765067)
chr4 (57-175)||(37935861-37935980)
chr4 (58-135)||(30305839-30305917)
chr4 (121-178)||(50279056-50279113)
chr4 (57-176)||(624479-624599)
chr4 (56-116)||(28465725-28465785)
chr4 (76-108)||(50512427-50512459)
[»] scaffold0009 (1 HSPs)
scaffold0009 (52-179)||(41600-41721)
[»] chr3 (26 HSPs)
chr3 (52-175)||(9684996-9685119)
chr3 (53-180)||(27453905-27454032)
chr3 (64-175)||(46844930-46845041)
chr3 (53-171)||(49443371-49443489)
chr3 (54-175)||(24303390-24303511)
chr3 (59-171)||(28951720-28951832)
chr3 (73-175)||(43280068-43280170)
chr3 (64-178)||(47098513-47098627)
chr3 (52-149)||(35849507-35849604)
chr3 (52-152)||(5173957-5174057)
chr3 (53-173)||(19222534-19222654)
chr3 (52-99)||(41411574-41411621)
chr3 (52-166)||(38949683-38949797)
chr3 (53-175)||(46817299-46817421)
chr3 (54-178)||(15005938-15006063)
chr3 (52-172)||(32776214-32776335)
chr3 (54-175)||(49983658-49983778)
chr3 (52-175)||(53347236-53347360)
chr3 (55-149)||(26880203-26880297)
chr3 (57-177)||(47098730-47098851)
chr3 (52-175)||(2522926-2523050)
chr3 (52-175)||(3748548-3748672)
chr3 (53-165)||(10952253-10952365)
chr3 (130-178)||(18764892-18764940)
chr3 (52-175)||(22501877-22502001)
chr3 (64-108)||(38669126-38669170)
[»] chr8 (17 HSPs)
chr8 (59-180)||(41272089-41272210)
chr8 (80-171)||(6851001-6851092)
chr8 (52-174)||(38283125-38283247)
chr8 (52-167)||(25812156-25812271)
chr8 (53-164)||(25824850-25824961)
chr8 (53-175)||(481011-481133)
chr8 (57-170)||(7763890-7764004)
chr8 (52-175)||(13059123-13059247)
chr8 (57-169)||(5683760-5683872)
chr8 (53-177)||(20894647-20894770)
chr8 (66-180)||(12770363-12770477)
chr8 (64-174)||(22202714-22202823)
chr8 (64-181)||(2114878-2114994)
chr8 (130-175)||(42877034-42877079)
chr8 (130-178)||(8402361-8402409)
chr8 (120-152)||(9814728-9814760)
chr8 (53-173)||(22437739-22437858)
[»] chr7 (12 HSPs)
chr7 (54-171)||(27788273-27788390)
chr7 (54-171)||(27791429-27791546)
chr7 (66-175)||(22774040-22774149)
chr7 (76-174)||(41331050-41331148)
chr7 (52-172)||(4611242-4611361)
chr7 (59-149)||(7836890-7836980)
chr7 (77-175)||(14650507-14650605)
chr7 (64-162)||(28059759-28059857)
chr7 (64-149)||(12007754-12007838)
chr7 (52-100)||(31191546-31191595)
chr7 (130-175)||(41853997-41854042)
chr7 (76-172)||(36931976-36932072)
[»] chr1 (21 HSPs)
chr1 (52-175)||(47469020-47469143)
chr1 (52-176)||(24874970-24875094)
chr1 (52-164)||(51137795-51137907)
chr1 (52-171)||(31124585-31124704)
chr1 (52-180)||(23991211-23991339)
chr1 (53-161)||(26909818-26909926)
chr1 (52-175)||(36666523-36666646)
chr1 (54-149)||(41927002-41927097)
chr1 (57-174)||(16997211-16997328)
chr1 (130-179)||(33507864-33507913)
chr1 (57-180)||(8741468-8741592)
chr1 (53-100)||(3742265-3742312)
chr1 (52-174)||(11333665-11333787)
chr1 (52-174)||(11491686-11491808)
chr1 (67-177)||(25036224-25036334)
chr1 (67-177)||(25041436-25041546)
chr1 (52-100)||(2514556-2514604)
chr1 (64-108)||(34557282-34557326)
chr1 (130-174)||(44579883-44579927)
chr1 (52-175)||(45333658-45333781)
chr1 (52-175)||(48638532-48638656)
[»] chr2 (9 HSPs)
chr2 (54-170)||(3596255-3596371)
chr2 (53-101)||(17524912-17524960)
chr2 (56-175)||(20919610-20919729)
chr2 (53-100)||(19958171-19958218)
chr2 (57-135)||(32854572-32854651)
chr2 (130-180)||(35429627-35429677)
chr2 (52-100)||(22333850-22333898)
chr2 (131-179)||(41492831-41492879)
chr2 (77-149)||(44558028-44558100)
[»] scaffold0246 (1 HSPs)
scaffold0246 (52-163)||(24392-24503)
[»] chr5 (19 HSPs)
chr5 (53-171)||(15085431-15085549)
chr5 (71-173)||(23155895-23155997)
chr5 (65-179)||(24456186-24456298)
chr5 (57-174)||(39777759-39777877)
chr5 (54-175)||(3198327-3198448)
chr5 (53-175)||(9196053-9196182)
chr5 (53-100)||(11313553-11313600)
chr5 (52-119)||(17064805-17064872)
chr5 (57-175)||(9125663-9125780)
chr5 (56-142)||(14804933-14805019)
chr5 (53-175)||(24477825-24477947)
chr5 (63-109)||(35317372-35317418)
chr5 (52-173)||(7143416-7143537)
chr5 (52-141)||(7171762-7171851)
chr5 (52-100)||(831664-831712)
chr5 (52-175)||(6558801-6558925)
chr5 (58-149)||(7443365-7443457)
chr5 (52-172)||(32550179-32550299)
chr5 (64-175)||(39799988-39800100)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 52 - 296
Target Start/End: Complemental strand, 16406692 - 16406448
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||| ||||| |||||||||||||||||||||||||||| |  ||||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||    
T  16406692 ggtcaagtagtttagtggctggaactcacacatttaaatatagagaagtaaggtgtctggggttcaaaccccagcccctgcataaattatacaatatctc 16406593  T
Q  152 tgctaattgagctaagctcacgggaacaacatgcgcaacatattaacttgcaagaaaagaaaaggaaattcattagtaatcaatgcattcaatcaacttt 251  Q
    | | |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  16406592 taccaattgaactaagctcacggggacaacatgcgcaacatattaacttgcaaaaaaagaaaaggatattcattattaatcaatgcattcaatcaacttt 16406493  T
Q  252 actacgatgatggttgtcttatgatcctaccaagacgtgtagtcg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16406492 actacgatgatggttgtcttatgatcctaccaagacgtgtagtcg 16406448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 17534969 - 17534873
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    |||||||||| |||||||| ||||||||||| ||||||||| |||||| ||||||| ||||||| || ||| | || |||||||||||| |||||||    
T  17534969 gtctagtagcctagtggctagaactcacacaattaaatgtggagaagtcaggtgtccggagttcgaaccccggcccctgcataaattatgcaatgtc 17534873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 32788801 - 32788896
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatg 147  Q
    ||||||||||| |||||||| || |||| ||| ||||||||| ||||||  |||||| ||||||| || ||||  || ||||||||||||||||||    
T  32788801 ggtctagtagcctagtggctagagctcatacaattaaatgtgtagaagtggggtgtccggagttcgaaccccaacccctgcataaattatacaatg 32788896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 32283660 - 32283541
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||  |||||| |  |||||||| | ||||||||| | |||| | |||||||| |||| || |||   ||||||||||||||| ||||||| ||    
T  32283660 gtctagtagtctagtggttataactcacataattaaatgtggaaaagtgaagtgtctggggttcgaaccccgacccttgcataaattatgcaatgtccct 32283561  T
Q  153 gctaattgagctaagctcac 172  Q
     | |||||||||||||||||    
T  32283560 accaattgagctaagctcac 32283541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 607109 - 606988
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| |||||| ||   |||||||| |||| |||| ||||||  |||||  ||||||| || | | |||| |||||||||||| |||| || ||    
T  607109 gtctagtagcctagtggttgtggctcacacaattaattgtggagaagtggggtgttcggagttcgaacctcggtccctgcataaattatgcaatatccct 607010  T
Q  153 gctaattgagctaagctcacgg 174  Q
     |||||||||||| ||||||||    
T  607009 actaattgagctatgctcacgg 606988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 29646495 - 29646543
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| ||||||    
T  29646495 ggtctagtagcctagtggctggagctcacacaattaaatgtggagaagt 29646543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 32166481 - 32166367
Alignment:
Q  64 tagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgag 162  Q
    |||||||| || |||||||| |||||| ||| ||||||   ||||| || ||||||||||| | || |||||| | ||| |||| || || | |||||||    
T  32166481 tagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcaaatcccggcccctgcatataatatgcaatatccctaccaattgag 32166382  T
Q  163 ctaagctcacgggaa 177  Q
    |||||||||||||||    
T  32166381 ctaagctcacgggaa 32166367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 2817014 - 2816894
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| ||||| |||| ||||||  |||||| ||||||| |||| ||| || |||||| |  || |||| ||     
T  2817014 ggtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggagttcgaatctcagcccctgcatataacatgcaatatcc 2816915  T
Q  151 ctgctaattgagctaagctca 171  Q
    || | ||||||||||||||||    
T  2816914 ctaccaattgagctaagctca 2816894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 7177419 - 7177295
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||  ||||| |||| ||||||  ||||||||| |||| || ||||| || |||||| |  ||||||| ||     
T  7177419 ggtcaagtagcctagtggctagagctcacactgtttaattgtggagaagtggggtgtctggggttcgaaccccagcccctgcatataaaatacaatatcc 7177320  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  7177319 ctaccaactgagctaagctcacggg 7177295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 7581163 - 7581103
Alignment:
Q  57 agtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttc 116  Q
    |||||| |||||||| || |||||||| ||||| |||| ||||||||||||||||| ||||    
T  7581163 agtagcctagtggctagagctcacacaatttaattgtggagaagtaaggtgtctggcgttc 7581103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 7865301 - 7865425
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaa-tgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||   |||||  | ||||||| ||| | || |||||| | ||| |||| ||     
T  7865301 ggtcaagtagcttagtggctagaactcacacaattaaattgtggagaagtggagtgtccagggttcaaaccccggcccctgcatataatatgcaatatcc 7865400  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  7865401 ctaccaactgagctaagctcacggg 7865425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 31852472 - 31852346
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| || |||||||| |||||| || ||||||  |||||| || |||| || | | | ||||||||||||||||||||||| |    
T  31852472 ggtctagtagcctagtggctagagctcacacaattaaatatggagaagtggggtgtccggggttcgaacctcggcccttgcataaattatacaatgtccc 31852373  T
Q  152 tgctaattgagctaagctcacgggaac 178  Q
    ||| || ||||||||||||||||||||    
T  31852372 tgccaactgagctaagctcacgggaac 31852346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 11294785 - 11294907
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| || |||| ||||||||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| |    
T  11294785 ggtctagtagcctagtggctagagctcaaacatttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccc 11294884  T
Q  152 tgctaattgagctaagctcacgg 174  Q
    ||| ||||||| |||||||||||    
T  11294885 tgccaattgagttaagctcacgg 11294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 51890920 - 51890797
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||||| |||| |||||||| || |||||||| ||||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| |    
T  51890920 ggtctaatagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccc 51890821  T
Q  152 tgctaattgagctaagctcacggg 175  Q
    ||| || |||||||||||||||||    
T  51890820 tgccaactgagctaagctcacggg 51890797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 45139853 - 45139954
Alignment:
Q  77 tcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacggga 176  Q
    ||||||| ||||||||| |||||| ||||||| || |||| || ||| | || |||||||||||||||||||| || | || ||||||||||||||||||    
T  45139853 tcacacaattaaatgtggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatacaatgtccctaccaactgagctaagctcacggga 45139952  T
Q  177 ac 178  Q
    ||    
T  45139953 ac 45139954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 3785034 - 3784913
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||  |||||  || |||| || ||| | || |||||||||||| |||| || |    
T  3785034 ggtctagtagtctagtggctggagctcacacatttaaatgtggagaagtgtggtgttcggggttcgaa-ccctgaccctgcataaattatgcaatatccc 3784936  T
Q  152 tgctaattgagctaagctcacgg 174  Q
    | | |||||||||||||||||||    
T  3784935 taccaattgagctaagctcacgg 3784913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 49264648 - 49264523
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||| |||| |||||||| || |||||||| ||||||||| ||||||  |||||| || |||| || | | | || ||||||| |||| ||||||||||    
T  49264648 gtctattagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcggcccctgcataagttatgcaatgtctct 49264549  T
Q  153 gctaattgagctaagctcacgggaac 178  Q
    ||||| |||| ||| |||||||||||    
T  49264548 gctaactgagttaaactcacgggaac 49264523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 29406479 - 29406360
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||| || |||||| |||| |||||||| ||||||||| ||||||  | |||| ||||||| || |||   || |||||||||||| ||||||| ||    
T  29406479 gtctagttgcctagtggttggagctcacacaattaaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccct 29406380  T
Q  153 gctaattgagctaagctcac 172  Q
     | |||||||||||||||||    
T  29406379 accaattgagctaagctcac 29406360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 40486564 - 40486453
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| || |||||||||||||||||| ||||||   ||||| || |||| || ||| | || |||||||||||| |||| || |    
T  40486564 ggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatatccc 40486465  T
Q  152 tgctaattgagc 163  Q
    ||| ||||||||    
T  40486464 tgccaattgagc 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 23132769 - 23132882
Alignment:
Q  67 tggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaa 166  Q
    |||||||| ||||||||||||||| || ||||||  |||||| ||||||| || |||  ||| |||||||||||| ||||||| |||  ||||||||||     
T  23132769 tggctggagctcacacatttaaatatggagaagtg-ggtgtccggagttcgaaccccgatccctgcataaattatgcaatgtccctgtcaattgagctat 23132867  T
Q  167 gctcacgggaacaac 181  Q
    ||| ||||| |||||    
T  23132868 gcttacggggacaac 23132882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 42002428 - 42002306
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||||| ||||||||| || |||||||| ||||||||| ||||||  ||||||||  ||||||| | | | || | |||||||||| ||||||| ||    
T  42002428 gtctagtagtttagtggctagagctcacacaattaaatgtggagaagtggggtgtctgaggttcaaaccacggcccctacataaattatgcaatgtccct 42002329  T
Q  153 gctaattgagctaagctcacggg 175  Q
     | || | |||||||||||||||    
T  42002328 accaactaagctaagctcacggg 42002306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 46791155 - 46791269
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| ||||||||| | |||||| | ||||||||| ||||||  |||||| ||||||| || ||||   | ||||||||||||||||||| |     
T  46791155 ggtctagtagcctagtggctgaagctcacagaattaaatgtgaagaagtggggtgtccggagttcgaaccccatctcctgcataaattatacaatgtttt 46791254  T
Q  152 tgctaattgagctaa 166  Q
    | | |||||||||||    
T  46791255 taccaattgagctaa 46791269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 42044026 - 42044115
Alignment:
Q  85 ttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacgg 174  Q
    ||||||||| ||||||  |||||| || ||||||| | | | || |||||||||||| |||||||||||| || ||||||||||||||||    
T  42044026 ttaaatgtggagaagtggggtgtccggggttcaaacctcggcccctgcataaattatgcaatgtctctgccaactgagctaagctcacgg 42044115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 5326590 - 5326491
Alignment:
Q  76 ctcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacggg 175  Q
    |||||||| ||||| ||| |||| |  |||||||||| |||||| ||||| |  | |||||||||||||||||| || | ||||||||||| ||||||||    
T  5326590 ctcacacaattaaaggtggagaaatggggtgtctggatttcaaaccccagcctctacataaattatacaatgtccctaccaattgagctaaactcacggg 5326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 2629699 - 2629585
Alignment:
Q  55 ctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgc 154  Q
    |||||||| || ||||| || |||||||| ||||||||| ||||||  |||||  || |||| || |||   || |||||||||||| ||||||| ||||    
T  2629699 ctagtagcctaatggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatgcaatgtccctgc 2629600  T
Q  155 taattgagctaagct 169  Q
     ||||||||||||||    
T  2629599 caattgagctaagct 2629585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 23924820 - 23924942
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||| |||| |||||||| || ||||||||  |||||||| |||||| | ||||| || |||| || ||| | || |||||||||||| ||||||| ||    
T  23924820 gtctaatagcctagtggctagagctcacacaaataaatgtggagaagtgaagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccct 23924919  T
Q  153 gctaattgagctaagctcacggg 175  Q
     | ||||||| |||| |||||||    
T  23924920 accaattgagttaagttcacggg 23924942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 41621292 - 41621338
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacggga 176  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||    
T  41621292 tgcataaattatacaatatctctgtcaattgagctaagctcacggga 41621338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 38848067 - 38848191
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaa-ttatacaatgtct 150  Q
    ||||||||||  |||||| | || |||||||||||||||||| ||||||  |||||| || |||| || |||   || |||||||| |||| |||| ||     
T  38848067 ggtctagtagtctagtggttagagctcacacatttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaatttatgcaatatcc 38848166  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    |||| ||||||||||||||| ||||    
T  38848167 ctgccaattgagctaagctcgcggg 38848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 52015539 - 52015491
Alignment:
Q  127 ccttgcataaattatacaatgtctctgctaattgagctaagctcacggg 175  Q
    ||||||||||||||| ||||||| |||| || |||||||||||||||||    
T  52015539 ccttgcataaattatgcaatgtccctgccaactgagctaagctcacggg 52015491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 9764972 - 9765067
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    ||||||||  |||| | |||| |||||||||||||||||| ||||||| |||||| || |||| ||||  |  || |||||||||||| |||||||    
T  9764972 tctagtagtatagtagttggagctcacacatttaaatgtggagaagtagggtgtccggggttcgaatcataccccctgcataaattatgcaatgtc 9765067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 37935980 - 37935861
Alignment:
Q  57 agtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    |||||| |||||||| || |||||||| |||||| ||| ||||||   ||||||||||||| || ||||| || |||||| | ||| |||| || || |     
T  37935980 agtagcctagtggctagagctcacacaattaaattgtggagaagtgttgtgtctggagttcgaaccccagcccctgcatataatatgcaatatccctacc 37935881  T
Q  156 aattgagctaagctcacggg 175  Q
    || |||||||||||||||||    
T  37935880 aactgagctaagctcacggg 37935861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 30305917 - 30305839
Alignment:
Q  58 gtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcata 135  Q
    ||||| ||||||||||| |||||||| |||||||||| |||||| ||||||| || |||| || ||||| || ||||||    
T  30305917 gtagcctagtggctggagctcacacattttaaatgtggagaagtgaggtgtccggggttcgaaccccagcccctgcata 30305839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 50279056 - 50279113
Alignment:
Q  121 cccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacgggaac 178  Q
    ||||| ||||||||||||||| ||||||| || | || |||||||||||| |||||||    
T  50279056 cccagcccttgcataaattatgcaatgtccctaccaactgagctaagctcgcgggaac 50279113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 624599 - 624479
Alignment:
Q  57 agtagcttagtggctggaactcacacattt-aaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    ||||| ||||||| | || ||||||||||| ||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| |||||||  | |     
T  624599 agtagtttagtggttagagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcaatgtccttacc 624500  T
Q  156 aattgagctaagctcacggga 176  Q
    || |||| |||||||||||||    
T  624499 aactgagttaagctcacggga 624479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 28465725 - 28465785
Alignment:
Q  56 tagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttc 116  Q
    ||||||| || ||||| || |||||||| |||| |||| |||||| |||||||||||||||    
T  28465725 tagtagcgtaatggctagagctcacacaattaattgtggagaagtgaggtgtctggagttc 28465785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 50512459 - 50512427
Alignment:
Q  76 ctcacacatttaaatgtgcagaagtaaggtgtc 108  Q
    |||||||||||||||||| ||||||||||||||    
T  50512459 ctcacacatttaaatgtggagaagtaaggtgtc 50512427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 41600 - 41721
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||||||||||||||||||| || |||||||||||||| ||| ||||||  |||||| || |||| || |||      |||||||||||| ||||||| |    
T  41600 ggtctagtagcttagtggctagagctcacacatttaaacgtggagaagtggggtgtccggggttcgaacccc------tgcataaattatgcaatgtccc 41693  T
Q  152 tgctaattgagctaagctcacgggaaca 179  Q
    ||| ||||||||||||||||||||||||    
T  41694 tgccaattgagctaagctcacgggaaca 41721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 9685119 - 9684996
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| ||||||||||| ||||||||||||||| || ||||||   ||||  ||  ||| || ||||| || |||||||||||| ||||||| |    
T  9685119 ggtctagtagcctagtggctggagctcacacatttaaatatggagaagtggagtgttcgggattcgaaccccagcccctgcataaattatgcaatgtccc 9685020  T
Q  152 tgctaattgagctaagctcacggg 175  Q
    ||| |||||||||| |||||||||    
T  9685019 tgccaattgagctatgctcacggg 9684996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 27453905 - 27454032
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||||||  | |||| || |||||  | |||||||||||| ||||||| ||    
T  27453905 gtctagtagcctagtggctggagctcacacatataaatgtggagaagaaaggtgtcccgggttcgaaccccagctcctgcataaattatgcaatgtccct 27454004  T
Q  153 gctaattgagctaagctcacgggaacaa 180  Q
     | | ||||||||||||| |||| ||||    
T  27454005 accagttgagctaagctctcggggacaa 27454032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 46844930 - 46845041
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagc 163  Q
    |||| |||||| |||||||||||||||||| ||||||| |||||| || |||| ||  ||   || |||||||||||| ||||||| |||| ||||||||    
T  46844930 tagtagctggagctcacacatttaaatgtggagaagtagggtgtccggggttcgaactccgacccctgcataaattatgcaatgtccctgccaattgagc 46845029  T
Q  164 taagctcacggg 175  Q
    ||||||||||||    
T  46845030 taagctcacggg 46845041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 49443371 - 49443489
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| |||||||| || |||||||||||||||||| ||||||  |||||| || |||| ||  || | || |||||||||||| ||||||| ||    
T  49443371 gtctagtagcctagtggctagagctcacacatttaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccct 49443470  T
Q  153 gctaattgagctaagctca 171  Q
    || ||||||||||| ||||    
T  49443471 gccaattgagctaaactca 49443489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 24303511 - 24303390
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    |||| |||| |||||||| || |||||||| ||||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| |||    
T  24303511 tctaatagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctg 24303412  T
Q  154 ctaattgagctaagctcacggg 175  Q
    | || |||||||||||||||||    
T  24303411 ccaactgagctaagctcacggg 24303390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 28951832 - 28951720
Alignment:
Q  59 tagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaat 158  Q
    |||| |||||||| || |||||||||||||||||| ||| ||  ||||||||| |||| || ||||| || |||||||||||| |||||||  ||| |||    
T  28951832 tagcctagtggctagagctcacacatttaaatgtgaagatgtggggtgtctggggttcgaaccccagcccctgcataaattatgcaatgtccttgccaat 28951733  T
Q  159 tgagctaagctca 171  Q
    |||| ||||||||    
T  28951732 tgagttaagctca 28951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 43280170 - 43280068
Alignment:
Q  73 gaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcac 172  Q
    ||||||||||||||||||||| ||||||  |||||| ||  ||| || ||| | || |||||||||||| ||||||| |||| ||||||||||||||| |    
T  43280170 gaactcacacatttaaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatgcaatgtccctgccaattgagctaagctcgc 43280071  T
Q  173 ggg 175  Q
    |||    
T  43280070 ggg 43280068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 47098627 - 47098513
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagc 163  Q
    ||||||||||| |||||| | ||||||||| |||||| |||||||||| |||| || | | | || |||||||||||||||||||| ||   || |||||    
T  47098627 tagtggctggagctcacataattaaatgtggagaagtgaggtgtctggggttcgaacctcggcccctgcataaattatacaatgtccctatcaactgagc 47098528  T
Q  164 taagctcacgggaac 178  Q
    |||| ||||||||||    
T  47098527 taagttcacgggaac 47098513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 35849604 - 35849507
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    |||||||||| |||||||||||| |||||||| ||||||| | ||||||  ||||| ||| |||| || ||| | || |||||||||||| |||||||    
T  35849604 ggtctagtagtttagtggctggagctcacacaattaaatggggagaagtggggtgtttggggttcgaaccccggcccctgcataaattatgcaatgtc 35849507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 5173957 - 5174057
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| || |||||||| ||||||||| ||||||  |||||  || |||| || ||| | || |||||||||||| |||||||||    
T  5173957 ggtctagtagcctagtggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaacccctgcccctgcataaattatgcaatgtctc 5174056  T
Q  152 t 152  Q
    |    
T  5174057 t 5174057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 19222534 - 19222654
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| || | || ||| |||||||| ||||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| ||    
T  19222534 gtctagtagcctaatagccggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccct 19222633  T
Q  153 gctaattgagctaagctcacg 173  Q
    || || |||| ||||||||||    
T  19222634 gccaactgagttaagctcacg 19222654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 41411574 - 41411621
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaag 99  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  41411574 ggtctagtagcttagtggctagaactcacacaattaaatgtggagaag 41411621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 38949797 - 38949683
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| ||||||||||| |||||||  ||||||||| ||||||  |||||  || |||| || ||| | || |||||||||||| ||||||| |    
T  38949797 ggtctagtagcctagtggctggagctcacactattaaatgtggagaagtggggtgttcggggttcgaaccccggcccctgcataaattatgcaatgtccc 38949698  T
Q  152 tgctaattgagctaa 166  Q
    | | || ||||||||    
T  38949697 taccaactgagctaa 38949683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 46817299 - 46817421
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||||| |||||||  | | |||||||||||||||||| ||||||  |||||  || ||||||| ||||  |  | |||||||||| ||||||||||    
T  46817299 gtctagtagtttagtggtcgaagctcacacatttaaatgtggagaagtggggtgttcggggttcaaaccccaacctctacataaattatgcaatgtctct 46817398  T
Q  153 gctaattgagctaagctcacggg 175  Q
    |  |||||||||| ||| |||||    
T  46817399 gtcaattgagctatgcttacggg 46817421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 15006063 - 15005938
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaagg-tgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||| ||||||| | || ||||| || ||||||||| ||||||  || |||| ||||||| || ||| |  | |||||||||||| |||||| |||    
T  15006063 tctagtagtttagtggttagagctcactcaattaaatgtggagaagtgtggatgtccggagttcgaaccccggctcctgcataaattatgcaatgtttct 15005964  T
Q  153 gctaattgagctaagctcacgggaac 178  Q
    || || |||||||| |||||||||||    
T  15005963 gccaactgagctaaactcacgggaac 15005938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 32776335 - 32776214
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||||||||| || || |||||||| |||||| | | |||||| ||||||| || |||| || ||| | || |||||||||||| |||||||     
T  32776335 ggtcaagtagcttagtgactagagctcacacaattaaattggggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtcc 32776236  T
Q  151 ctgctaattgagctaagctcac 172  Q
    || | || ||||||||||||||    
T  32776235 ctaccaactgagctaagctcac 32776214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 49983658 - 49983778
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    ||||||||| | |||||| || || ||||| |||| |||| ||||||| |||||| || |||| || ||||  || |||||||||||||||||||| ||     
T  49983658 tctagtagccttgtggctagagct-acacaattaattgtggagaagtagggtgtccggggttcgaaccccaacccctgcataaattatacaatgtcccta 49983756  T
Q  154 ctaattgagctaagctcacggg 175  Q
    | || ||||||||| |||||||    
T  49983757 ccaactgagctaagttcacggg 49983778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 53347236 - 53347360
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| ||||||||||||||  || |||||||| |||||| ||| ||||||   |||||||| |||| || |||||||| |||||| | ||| |||| ||     
T  53347236 ggtcaagtagcttagtggccagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccagtccctgcatataatatgcaatatcc 53347335  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  53347336 ctaccaactgagctaagctcacggg 53347360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 26880297 - 26880203
Alignment:
Q  55 ctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    |||||||| || ||| | || |||||||||||||||||| ||||||  |||||||| ||||| || |||   || |||||||||||| |||||||    
T  26880297 ctagtagcctaatggttagagctcacacatttaaatgtggagaagtggggtgtctgaagttcgaaccccgacccctgcataaattatgcaatgtc 26880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 47098851 - 47098730
Alignment:
Q  57 agtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    ||||||||||||||| || |||||||| ||||| |||| ||||||   |||||||| |||| || ||| | || |||||| | ||| |||| || || |     
T  47098851 agtagcttagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctacc 47098752  T
Q  156 aattgagctaagctcacgggaa 177  Q
    || |||||||||||||||||||    
T  47098751 aactgagctaagctcacgggaa 47098730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 2523050 - 2522926
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| ||||| |||| ||||||   ||||| || ||||||| |||||  |||||||| | ||| |||| ||     
T  2523050 ggtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcaaaccccagctcttgcatataatatgcaatatcc 2522951  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  2522950 ctaccaactgagctaagctcacggg 2522926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 3748548 - 3748672
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| |||||| ||| |||||| || |||| || |||| || ||||  || |||||| | |||||||| ||     
T  3748548 ggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtgagatgtccggggttcgaaccccaacccctgcatataatatacaatatcc 3748647  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  3748648 ctaccaactgagctaagctcacggg 3748672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 10952253 - 10952365
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||| || ||||||||||| |||||||||| ||| ||| | ||||  |||||| || |||| || ||  | || ||||||||||||  |||||| ||    
T  10952253 gtctagttgcctagtggctggagctcacacattaaaacgtggataagtggggtgtcgggggttcgaacccaggcccctgcataaattatgtaatgtccct 10952352  T
Q  153 gctaattgagcta 165  Q
    || ||||||||||    
T  10952353 gccaattgagcta 10952365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 18764892 - 18764940
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacgggaac 178  Q
    |||||||||||| |||||||  ||| |||||||||||||||||| ||||    
T  18764892 tgcataaattatgcaatgtccttgccaattgagctaagctcacgcgaac 18764940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 22501877 - 22502001
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| |||||| ||| ||||||   |||||||| |||| || ||||| || |||||| | ||| |||| ||     
T  22501877 ggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccagcccctgcatataatatgcaatatcc 22501976  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  22501977 ctaccaactgagctaagctcacggg 22502001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 38669170 - 38669126
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtc 108  Q
    ||||||||||| |||||| | ||||||||| ||||||||||||||    
T  38669170 tagtggctggagctcacataattaaatgtggagaagtaaggtgtc 38669126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 41272210 - 41272089
Alignment:
Q  59 tagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaat 158  Q
    |||| ||||||| ||| |||||||||||||||||| ||||||   |||||  |||||| || ||||| || |||||||||||| ||||||| || |||||    
T  41272210 tagcctagtggcgggagctcacacatttaaatgtggagaagtggtgtgtccagagttcgaaccccagcccctgcataaattatgcaatgtccctactaat 41272111  T
Q  159 tgagctaagctcacgggaacaa 180  Q
    |||||||  |||||||| ||||    
T  41272110 tgagctatactcacggggacaa 41272089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 6851001 - 6851092
Alignment:
Q  80 cacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctca 171  Q
    |||||||||||||| |||||||||||||| || |||| ||||||   || |||||||||||| |||||||||| | ||||||| ||||||||    
T  6851001 cacatttaaatgtggagaagtaaggtgtccggggttcgaatccctacccctgcataaattatgcaatgtctctaccaattgagttaagctca 6851092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 38283247 - 38283125
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| ||  ||||||| ||||||||| ||||||  ||||||||| |||| || ||| | || ||||||||||||| |||||| |    
T  38283247 ggtctagtagcctagtggctagagttcacacaattaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatataatgtccc 38283148  T
Q  152 tgctaattgagctaagctcacgg 174  Q
    ||| || |||| ||| |||||||    
T  38283147 tgccaactgagttaaactcacgg 38283125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 25812156 - 25812271
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||| | || |||||||| ||||||||  ||||||  ||||||||| |||| || ||| | || | |||||||||| ||||||| |    
T  25812156 ggtctagtagcctagtggttagagctcacacaattaaatgttgagaagtggggtgtctggggttcgaaccccggaccctccataaattatgcaatgtccc 25812255  T
Q  152 tgctaattgagctaag 167  Q
    ||| ||||||||||||    
T  25812256 tgccaattgagctaag 25812271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 25824850 - 25824961
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||||||||||||||| || |||||||| ||| ||||  ||||||  ||||||||| |||| || |||   ||||||||||||||| ||||||| ||    
T  25824850 gtctagtagcttagtggctagagctcacacaattatatgttgagaagtggggtgtctggggttcgaaccccgacccttgcataaattatgcaatgtccct 25824949  T
Q  153 gctaattgagct 164  Q
     | |||||||||    
T  25824950 accaattgagct 25824961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 481133 - 481011
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| ||||||||  | |||||||| ||||||||| ||||||  |||||| || |||| || | | | || |||||||||||| ||||||| ||    
T  481133 gtctagtagcctagtggctaaatctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccgcggcccctgcataaattatgcaatgtccct 481034  T
Q  153 gctaattgagctaagctcacggg 175  Q
     | || |||||||||||||||||    
T  481033 accaactgagctaagctcacggg 481011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 7763890 - 7764004
Alignment:
Q  57 agtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    ||||||||||||||| || |||||||| ||||| |||| ||||||  |||||| |||||||||||||| | || |||||| | ||| |||| ||||| |     
T  7763890 agtagcttagtggctagagctcacacaatttaattgtggagaagtggggtgtccggagttcaaatcccggcccctgcatataatatgcaatatctctacc 7763989  T
Q  156 aattgagctaagctc 170  Q
    || ||||||||||||    
T  7763990 aactgagctaagctc 7764004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 13059123 - 13059247
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacattt-aaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| ||||||||||| | ||||||||| ||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| || ||||     
T  13059123 ggtcaagtagcctagtggctggagcacacacattttaaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcattgtcc 13059222  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  13059223 ctaccaactgagctaagctcacggg 13059247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 5683872 - 5683760
Alignment:
Q  57 agtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgcta 156  Q
    |||||||||||| || || ||||||||| |||||||| ||||||| ||||||||| |||| || ||||  || |||||| | ||| |||| |  || | |    
T  5683872 agtagcttagtgactagagctcacacatataaatgtggagaagtagggtgtctggggttcgaaccccaacccctgcatataatatgcaatattcctacca 5683773  T
Q  157 attgagctaagct 169  Q
    |||||||||||||    
T  5683772 attgagctaagct 5683760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 20894647 - 20894770
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||| ||| |||||| | || |||||||| |||| |||| |||||| || |||||| ||||| || ||| | ||||||||||||||| ||||||| ||    
T  20894647 gtctagaagcatagtggttagagctcacacaattaattgtggagaagtgagatgtctg-agttcgaaccccggcccttgcataaattatgcaatgtccct 20894745  T
Q  153 gctaattgagctaagctcacgggaa 177  Q
    || || |||| || || ||||||||    
T  20894746 gccaactgagttatgcacacgggaa 20894770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 12770477 - 12770363
Alignment:
Q  66 gtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagcta 165  Q
    |||||| || |||||||| ||||||||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| ||   || |||||||    
T  12770477 gtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagcta 12770378  T
Q  166 agctcacgggaacaa 180  Q
    |||||| ||| ||||    
T  12770377 agctcatggggacaa 12770363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 22202823 - 22202714
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagc 163  Q
    |||||||||||||||| ||| ||||||||| | ||||  ||||| ||| ||| ||||||||   | |||||||||||| ||||||| || | || ||||     
T  22202823 tagtggctggaactcatacaattaaatgtggaaaagtggggtgtttgg-gtttaaatcccaactcctgcataaattatgcaatgtccctaccaactgagt 22202725  T
Q  164 taagctcacgg 174  Q
    |||||||||||    
T  22202724 taagctcacgg 22202714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 2114994 - 2114878
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagc 163  Q
    ||||||||||| | |||||| ||||||||| ||||||  |||||| ||||||| || ||  | ||||||||||| |||  | ||||||| | || ||||     
T  2114994 tagtggctggagcccacacaattaaatgtggagaagtggggtgtccggagttcgaa-cctggcccttgcataaaatatgtattgtctctaccaactgagt 2114896  T
Q  164 taagctcacgggaacaac 181  Q
    |||||||||||| |||||    
T  2114895 taagctcacggggacaac 2114878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 42877079 - 42877034
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacggg 175  Q
    |||||||||||| ||||||| || | ||||||||||||||||||||    
T  42877079 tgcataaattatgcaatgtccctaccaattgagctaagctcacggg 42877034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 8402361 - 8402409
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacgggaac 178  Q
    |||||| ||||| ||||||| || | |||||||||||||||||||||||    
T  8402361 tgcatatattatgcaatgtccctaccaattgagctaagctcacgggaac 8402409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 9814728 - 9814760
Alignment:
Q  120 tcccagtccttgcataaattatacaatgtctct 152  Q
    ||||||||||| |||||||||||||||||||||    
T  9814728 tcccagtccttacataaattatacaatgtctct 9814760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 22437739 - 22437858
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||  ||||| ||| |||||||||  ||||||||| |||| | |||||||||| |||| || | ||  || |||||||||||| |||| || ||    
T  22437739 gtctagtagtctagtgactgaaactcacacgattaaatgtggagaactgaggtgtctggggttcgaa-ctcaacccctgcataaattatgcaatatccct 22437837  T
Q  153 gctaattgagctaagctcacg 173  Q
     | || |||||||||||||||    
T  22437838 accaactgagctaagctcacg 22437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 27788390 - 27788273
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    ||||||||| | ||||||||| |||| ||||||||||||| ||||||  ||||||||| |||| || ||| | || |||||||||||| |||| || |||    
T  27788390 tctagtagcctggtggctggagctcatacatttaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatgcaatatccctg 27788291  T
Q  154 ctaattgagctaagctca 171  Q
    | |||||||||| |||||    
T  27788290 ccaattgagctatgctca 27788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 27791546 - 27791429
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    ||||||||| | ||||||||| |||| ||||||||||||| ||||||  ||||||||| |||| || ||| | || |||||||||||| |||| || |||    
T  27791546 tctagtagcctggtggctggagctcatacatttaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatgcaatatccctg 27791447  T
Q  154 ctaattgagctaagctca 171  Q
    | |||||||||| |||||    
T  27791446 ccaattgagctatgctca 27791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 22774149 - 22774040
Alignment:
Q  66 gtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagcta 165  Q
    ||||| ||| |||||||||||||||||| ||||||  |||||| || |||  || ||| | || |||||||||||| ||||||| |||  ||||||||||    
T  22774149 gtggccggagctcacacatttaaatgtggagaagtggggtgtccggggtttgaacccctgcccctgcataaattatgcaatgtccctgtcaattgagcta 22774050  T
Q  166 agctcacggg 175  Q
    ||||||||||    
T  22774049 agctcacggg 22774040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 41331050 - 41331148
Alignment:
Q  76 ctcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacgg 174  Q
    |||||||| ||||||||| ||||||  |||||| ||| ||| || |||   || |||||||||||| ||||||| |||| || ||||||||||||||||    
T  41331050 ctcacacaattaaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtccctgccaactgagctaagctcacgg 41331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 4611361 - 4611242
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| || ||||| || |||||||| |||| |||| ||||||  ||||||||  |||| || ||||| || | |||||||||| ||||||| |    
T  4611361 ggtctagtagcctaatggctagagctcacacaattaattgtggagaagtg-ggtgtctgtggttcgaaccccagcccctacataaattatgcaatgtccc 4611263  T
Q  152 tgctaattgagctaagctcac 172  Q
    | | || ||||||||||||||    
T  4611262 taccaactgagctaagctcac 4611242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 7836890 - 7836980
Alignment:
Q  59 tagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    |||| |||||||| || |||||||| ||||||||| ||||||   ||||  ||||||| || |||  ||| ||||||||||||||||||||    
T  7836890 tagcctagtggctagagctcacacaattaaatgtggagaagtggtgtgttcggagttcgaaccccgatccctgcataaattatacaatgtc 7836980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 14650605 - 14650507
Alignment:
Q  77 tcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcacggg 175  Q
    ||||||||||| ||||| |||| |  || |||||| |||| ||  ||  ||| |||||||||||| |||||||| | | ||||||||||||||||||||    
T  14650605 tcacacatttagatgtggagaaatgcggcgtctggggttcgaactccgatccctgcataaattatgcaatgtctttaccaattgagctaagctcacggg 14650507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 28059857 - 28059759
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgag 162  Q
    |||||||| || |||||||||||||||||| |||| |  |||||   |||||| || ||| | || |||||||||||| ||||||| ||| ||||||||    
T  28059857 tagtggcttgagctcacacatttaaatgtggagaattggggtgttcagagttcgaaccccggcccctgcataaattatgcaatgtccctgttaattgag 28059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 12007754 - 12007838
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    |||||| |||| |||||||| |||| |||| |||||| || |||| || |||| || ||||| || ||||||||||||||||||||    
T  12007754 tagtggttggagctcacacaattaattgtggagaagtgag-tgtccggggttcgaaccccagcccctgcataaattatacaatgtc 12007838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 31191546 - 31191595
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacac-atttaaatgtgcagaagt 100  Q
    |||||||||||||||||||| || ||||||| |||||| |||||||||||    
T  31191546 ggtctagtagcttagtggctagagctcacacaatttaattgtgcagaagt 31191595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 41854042 - 41853997
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacggg 175  Q
    |||||||||||| ||||||| |||| || |||||||||||||||||    
T  41854042 tgcataaattatgcaatgtccctgccaactgagctaagctcacggg 41853997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 36932072 - 36931976
Alignment:
Q  76 ctcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctcac 172  Q
    |||||||| ||||||||  ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| |||| || ||||||||| ||||    
T  36932072 ctcacacaattaaatgtagagaagtggggtgtccggggttcgaaccccggaccctgcataaattatgcaatgtccctgccaactgagctaagttcac 36931976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 47469020 - 47469143
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||| ||||| |||||| | || |||||||| ||||||||| ||||||  |||||| || |||| || | ||| || |||||||||||| ||||||| |    
T  47469020 ggtcttgtagcctagtggttagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcagcccctgcataaattatgcaatgtccc 47469119  T
Q  152 tgctaattgagctaagctcacggg 175  Q
    ||| || |||||||||||||||||    
T  47469120 tgccaactgagctaagctcacggg 47469143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 24875094 - 24874970
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| ||||||||||| |||||||| |||||| || ||||||  |||||| |  |||| || ||| | || |||||||||||| |||| || |    
T  24875094 ggtctagtagcctagtggctggagctcacacaattaaatatggagaagtggggtgtccgaggttcgaacccctgcccatgcataaattatgcaatatccc 24874995  T
Q  152 tgctaattgagctaagctcacggga 176  Q
    | | || ||||||||||||||||||    
T  24874994 taccaactgagctaagctcacggga 24874970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 51137907 - 51137795
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||||||||||||||||| |||| ||| |||||||||||||| ||||||  | ||||  |||||| ||  || | || |||||||||||||||||||| |    
T  51137907 ggtctagtagcttagtggttggagctcgcacatttaaatgtggagaagtgggatgtccagagttcgaactccggcccctgcataaattatacaatgtccc 51137808  T
Q  152 tgctaattgagct 164  Q
    | | |||||||||    
T  51137807 taccaattgagct 51137795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 31124585 - 31124704
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||||| |||| |||||||| || |||||||| ||||||||| ||||||  ||| || ||||||| || ||| | || |||||||||||| |||||||      
T  31124585 ggtctaatagcctagtggctagagctcacacaattaaatgtggagaagtggggtatccggagttcgaaccccggcccctgcataaattatgcaatgtcct 31124684  T
Q  152 tgctaattgagctaagctca 171  Q
    ||| || |||||||||||||    
T  31124685 tgccaactgagctaagctca 31124704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 23991211 - 23991339
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||| ||| |||||||| || |||||||| ||||||||| ||||||  ||||||  | |||| || ||| | || |||||||||||| ||||||| |    
T  23991211 ggtctagaagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccagggttcgaaccccggcccctgcataaattatgcaatgtccc 23991310  T
Q  152 tgctaattgagctaagctcacgggaacaa 180  Q
    ||| || ||||  |||||||| |||||||    
T  23991311 tgccaactgagtcaagctcacaggaacaa 23991339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 26909818 - 26909926
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| ||||||||| | |||||||||||||||||| ||||||  ||||||  | |||| || ||| | |  |||||||||||| ||||||| ||    
T  26909818 gtctagtagcctagtggctgaagctcacacatttaaatgtggagaagtggggtgtccagggttcgaacccccgcctctgcataaattatgcaatgtccct 26909917  T
Q  153 gctaattga 161  Q
    || ||||||    
T  26909918 gccaattga 26909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 36666523 - 36666646
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||| ||||| || ||||| || |||||||| |||| |||| ||||||  |||||| || |||| || ||| | || |||||||||||| ||||||| |    
T  36666523 ggtctggtagcctaatggctagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccc 36666622  T
Q  152 tgctaattgagctaagctcacggg 175  Q
    | | || |||||||||||||||||    
T  36666623 taccaactgagctaagctcacggg 36666646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 41927097 - 41927002
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    ||||||||| |||||| | || |||||||| ||||||||| |||||||||||||| ||  ||| |||| ||| ||  ||||||||||| |||||||    
T  41927097 tctagtagcctagtggttagagctcacacaattaaatgtggagaagtaaggtgtccgggattcgaatctcagccccagcataaattatgcaatgtc 41927002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 16997211 - 16997328
Alignment:
Q  57 agtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgcta 156  Q
    |||||| ||||||||| | |||||||| || |||||| |||||| ||||||| || |||| || | | | || |||||||| ||| || ||||||| | |    
T  16997211 agtagcgtagtggctgaagctcacacaattgaatgtggagaagtgaggtgtccggggttcgaacctcggcccctgcataaaatatgcattgtctctacca 16997310  T
Q  157 attgagctaagctcacgg 174  Q
    | ||||||||||||||||    
T  16997311 actgagctaagctcacgg 16997328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 33507913 - 33507864
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacgggaaca 179  Q
    |||||||||||||||||||| |||| |  |||||||||||||||||||||    
T  33507913 tgcataaattatacaatgtccctgccacctgagctaagctcacgggaaca 33507864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 8741592 - 8741468
Alignment:
Q  57 agtagcttagtggctggaactcacacatt-taaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    |||||| |||||| |||| |||||||||| |||||||| ||||||  |||||| || |||| || ||| | || ||||||||||||  |||||| || |     
T  8741592 agtagcctagtggttggagctcacacattataaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgtaatgtccctacc 8741493  T
Q  156 aattgagctaagctcacgggaacaa 180  Q
    || ||| ||||||||||||| ||||    
T  8741492 aactgaactaagctcacggggacaa 8741468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 3742265 - 3742312
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||||    
T  3742265 gtctagtagcctagtggttggaactcacacatgtaaatgtggagaagt 3742312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 11333787 - 11333665
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||  ||||| || || |||||||| ||||||||| ||||||  |||||| || |||| ||  || | || |||||||||||| ||||||| |    
T  11333787 ggtctagtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccc 11333688  T
Q  152 tgctaattgagctaagctcacgg 174  Q
    | | || ||||||||| ||||||    
T  11333687 taccaactgagctaagttcacgg 11333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 11491808 - 11491686
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||  ||||| || || |||||||| ||||||||| ||||||  |||||| || |||| ||  || | || |||||||||||| ||||||| |    
T  11491808 ggtctagtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccc 11491709  T
Q  152 tgctaattgagctaagctcacgg 174  Q
    | | || ||||||||| ||||||    
T  11491708 taccaactgagctaagttcacgg 11491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 25036224 - 25036334
Alignment:
Q  67 tggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaa 166  Q
    |||| ||| |||||||| ||||||||| |||| |  |||||  || |||| |||||| | || |||||||||||| ||||||  |||| || ||||||||    
T  25036224 tggcgggagctcacacaattaaatgtggagaaatggggtgttcggggttcgaatcccggcccctgcataaattatgcaatgttcctgccaactgagctaa 25036323  T
Q  167 gctcacgggaa 177  Q
     ||||||||||    
T  25036324 actcacgggaa 25036334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 25041436 - 25041546
Alignment:
Q  67 tggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaa 166  Q
    |||| ||| |||||||| ||||||||| |||| |  |||||  || |||| |||||| | || |||||||||||| ||||||  |||| || ||||||||    
T  25041436 tggcgggagctcacacaattaaatgtggagaaatggggtgttcggggttcgaatcccggcccctgcataaattatgcaatgttcctgccaactgagctaa 25041535  T
Q  167 gctcacgggaa 177  Q
     ||||||||||    
T  25041536 actcacgggaa 25041546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 2514556 - 2514604
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    |||||| |||| ||||||||||| |||||||| ||||||||| ||||||    
T  2514556 ggtctaatagcatagtggctggagctcacacaattaaatgtggagaagt 2514604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 34557282 - 34557326
Alignment:
Q  64 tagtggctggaactcacacatttaaatgtgcagaagtaaggtgtc 108  Q
    |||||||| || |||||||||||||||||| ||||||| ||||||    
T  34557282 tagtggctagagctcacacatttaaatgtggagaagtagggtgtc 34557326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 44579927 - 44579883
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacgg 174  Q
    |||||||||||||||||||||||   || ||||||||||||||||    
T  44579927 tgcataaattatacaatgtctctatcaactgagctaagctcacgg 44579883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 45333658 - 45333781
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaat-gtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| |||||| ||| ||||||   |||||||| |||| || ||||| || |||||| || || |||| ||     
T  45333658 ggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccagcccctgcatatat-atgcaatatcc 45333756  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    |||| || |||||||||||||||||    
T  45333757 ctgccaactgagctaagctcacggg 45333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 48638656 - 48638532
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| |||||||| || |||||||| ||||| |||| ||||||  ||||||||| |||| || ||||| || |||||| |  || |||| ||     
T  48638656 ggtcaagtagcctagtggctagagctcacacagtttaattgtggagaagtggggtgtctggggttcgaaccccagcccctgcatataaaatgcaatatcc 48638557  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | || |||||||||||||||||    
T  48638556 ctaccaactgagctaagctcacggg 48638532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 3596371 - 3596255
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    ||||||||  ||||||||||| |||||||| ||||||||| ||||||  |||||| || |||| || |||   || |||||||||||| |||||||||||    
T  3596371 tctagtagtgtagtggctggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtctctg 3596272  T
Q  154 ctaattgagctaagctc 170  Q
    | || | ||||||||||    
T  3596271 ccaactaagctaagctc 3596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17524960 - 17524912
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagta 101  Q
    |||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  17524960 gtctagtagcctagtggctggagctcacacatttaaatgtggagaagta 17524912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 20919729 - 20919610
Alignment:
Q  56 tagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    ||||||| |||||||| || |||||| | ||||||||| ||||||  |||||| || |||| || ||| | ||  ||||||||||| ||||||| || |     
T  20919729 tagtagcctagtggctagagctcacataattaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccctacc 20919630  T
Q  156 aattgagctaagctcacggg 175  Q
    || |||||||||||||||||    
T  20919629 aactgagctaagctcacggg 20919610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 19958218 - 19958171
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    |||||||||||||||||||||| |||||||| |||| |||| ||||||    
T  19958218 gtctagtagcttagtggctggagctcacacaattaattgtggagaagt 19958171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 32854651 - 32854572
Alignment:
Q  57 agtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcata 135  Q
    |||||| ||||||||||| |||||||| |||||||||| ||||||| |||||| || |||| || ||| | |||||||||    
T  32854651 agtagcctagtggctggagctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccccggcccttgcata 32854572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 35429627 - 35429677
Alignment:
Q  130 tgcataaattatacaatgtctctgctaattgagctaagctcacgggaacaa 180  Q
    |||||||||||| |||||||||| | || ||||||||||||||||| ||||    
T  35429627 tgcataaattatgcaatgtctctaccaactgagctaagctcacggggacaa 35429677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 22333898 - 22333850
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    ||||||||||| |||| |||||| |||||||| ||||||||| ||||||    
T  22333898 ggtctagtagcctagttgctggagctcacacaattaaatgtggagaagt 22333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 41492831 - 41492879
Alignment:
Q  131 gcataaattatacaatgtctctgctaattgagctaagctcacgggaaca 179  Q
    ||||||||||| |||||||||| | || ||||||||||| |||||||||    
T  41492831 gcataaattatgcaatgtctctaccaactgagctaagcttacgggaaca 41492879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 44558100 - 44558028
Alignment:
Q  77 tcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    ||||||| ||||||||| ||||||  |||||| || |||| || ||||| || |||||||||||| |||||||    
T  44558100 tcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccagcccctgcataaattatgcaatgtc 44558028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 24503 - 24392
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||| |||||||| || |||||||||||||||||| ||||||   ||||| || |||| || ||| | || |||||||||||| |||| || |    
T  24503 ggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatatccc 24404  T
Q  152 tgctaattgagc 163  Q
    ||| ||||||||    
T  24403 tgccaattgagc 24392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 15085549 - 15085431
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||| |||||||| || || ||||| || ||||||  ||| | |||| || || |||| |||| |||||| |||||||||||| |||||| |||    
T  15085549 gtctagtagcctagtggctagagcttacacaattcaatgtggggaaatgaggtatccggggttcgaatctcagtccctgcataaattatgcaatgtttct 15085450  T
Q  153 gctaattgagctaagctca 171  Q
       ||||||||||||||||    
T  15085449 atcaattgagctaagctca 15085431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 23155997 - 23155895
Alignment:
Q  71 tggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagctaagctc 170  Q
    |||| |||||||||| ||||||| ||||||  |||||  ||||||| || | | | |  |||||||||||| ||||||| |||| |||||||||||||||    
T  23155997 tggagctcacacattaaaatgtggagaagttgggtgttcggagttcgaacctcggcctctgcataaattatgcaatgtccctgccaattgagctaagctc 23155898  T
Q  171 acg 173  Q
    |||    
T  23155897 acg 23155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 24456298 - 24456186
Alignment:
Q  65 agtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgagct 164  Q
    |||||||||| ||||||||||||| |||| ||||||  |||||| || |||| ||  ||   || |||||||||||| ||||||| |||| |||||||||    
T  24456298 agtggctggagctcacacatttaactgtggagaagtg-ggtgtccggggttcgaactccgacccctgcataaattatgcaatgtc-ctgccaattgagct 24456201  T
Q  165 aagctcacgggaaca 179  Q
    | |||||||||||||    
T  24456200 atgctcacgggaaca 24456186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 39777877 - 39777759
Alignment:
Q  57 agtagcttagtggctggaactcacacattt-aaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgct 155  Q
    |||||| || ||||||||| || ||||||| ||||||| |||||| |||| || |  ||||||| ||| |||  |||||||||||||||||||| || |     
T  39777877 agtagcctaatggctggaattctcacattttaaatgtggagaagtgaggtatcagaggttcaaacccctgtcactgcataaattatacaatgtccctacc 39777778  T
Q  156 aattgagctaagctcacgg 174  Q
    || |||||||| |||||||    
T  39777777 aactgagctaaactcacgg 39777759  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 3198448 - 3198327
Alignment:
Q  54 tctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctg 153  Q
    ||||||||  ||||||| ||| |||||| | ||||||||| ||||||| |||||| || |||| || | ||  || |||||| ||||| ||||||| ||     
T  3198448 tctagtagtctagtggcgggacctcacataattaaatgtggagaagtagggtgtccggggttcgaacctcaacccctgcatatattatgcaatgtcccta 3198349  T
Q  154 ctaattgagctaagctcacggg 175  Q
    | || |||||||||||||||||    
T  3198348 ccaactgagctaagctcacggg 3198327  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 9196053 - 9196182
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacattta-------aatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaa 145  Q
    |||||||| ||||||||||||| ||||||||||||       |||||| ||||||  | |||| ||||||| ||  |||  || |||||||||||| |||    
T  9196053 gtctagtatcttagtggctggagctcacacatttaaacgtggaatgtggagaagtgggttgtccggagttcgaactccatcccctgcataaattatgcaa 9196152  T
Q  146 tgtctctgctaattgagctaagctcacggg 175  Q
    |||| |||| |||||| ||| |||||||||    
T  9196153 tgtccctgccaattgaactatgctcacggg 9196182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 11313600 - 11313553
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    ||||||||||||||||| |||| |||||||| |||||| |||||||||    
T  11313600 gtctagtagcttagtggttggagctcacacaattaaatatgcagaagt 11313553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 17064805 - 17064872
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaa 119  Q
    |||| |||||| |||||||| ||||||||||| ||||||||| ||||||  |||||| || |||||||    
T  17064805 ggtcaagtagcctagtggctagaactcacacaattaaatgtggagaagtggggtgtccggggttcaaa 17064872  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 9125780 - 9125663
Alignment:
Q  57 agtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgcta 156  Q
    |||||| |||||||| || ||||||||| |||||||| |||||| ||||||| || |||| || ||| | ||| ||||| | ||| |||| || || | |    
T  9125780 agtagcctagtggctagagctcacacatataaatgtggagaagtgaggtgtccggggttcgaaccccggccct-gcatataatatgcaatatcgctacca 9125682  T
Q  157 attgagctaagctcacggg 175  Q
    | |||||||||||||||||    
T  9125681 actgagctaagctcacggg 9125663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 14804933 - 14805019
Alignment:
Q  56 tagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattata 142  Q
    |||||||||||||||| ||  ||||||| ||||||||| ||||||  |||||| || |||| || | ||| ||||| ||||||||||    
T  14804933 tagtagcttagtggctagagttcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcagcccttgtataaattata 14805019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 24477947 - 24477825
Alignment:
Q  53 gtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctct 152  Q
    |||||||||  ||||||||||| |||||||| ||||||||| ||||||  |||||| |  |||| || | ||  || |||||| ||||| ||| ||| ||    
T  24477947 gtctagtagactagtggctggagctcacacaattaaatgtggagaagtggggtgtccgaggttcgaaccacataccctgcatatattatgcaacgtccct 24477848  T
Q  153 gctaattgagctaagctcacggg 175  Q
     | || |||||||||||||||||    
T  24477847 accaactgagctaagctcacggg 24477825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 35317372 - 35317418
Alignment:
Q  63 ttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtct 109  Q
    ||||||||||||  ||||||||||||||||| |||||| ||||||||    
T  35317372 ttagtggctggagttcacacatttaaatgtgaagaagtgaggtgtct 35317418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 7143537 - 7143416
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    |||| |||||| || ||||| ||||||||||| |||| |||| |||||| ||||||| || |||| ||  |||| |  |||||| | |||||||| || |    
T  7143537 ggtcaagtagcctaatggctagaactcacacaattaattgtgaagaagtgaggtgtccggggttcgaactccagcctgtgcatataatatacaatatccc 7143438  T
Q  152 tgctaattgagctaagctcacg 173  Q
    | | |||||| |||||||||||    
T  7143437 taccaattgaactaagctcacg 7143416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 7171851 - 7171762
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattat 141  Q
    ||||||||| |  |||||||||| |||||||| |||| |||| ||||||  ||||||||| |||| || ||| | || ||||||||||||    
T  7171851 ggtctagtaaccgagtggctggagctcacacaattaattgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattat 7171762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 831712 - 831664
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagt 100  Q
    |||| |||||||| |||||| ||||||||||| ||||||||| ||||||    
T  831712 ggtcaagtagcttggtggctagaactcacacaattaaatgtggagaagt 831664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 6558925 - 6558801
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacaca-tttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtct 150  Q
    |||| |||||| ||||| || || |||||||| ||||| |||| ||||||| |||||| ||||||| || |||   || |||||| | ||| |||| ||     
T  6558925 ggtcaagtagcctagtgactagagctcacacaatttaattgtggagaagtagggtgtccggagttcgaaccccgacccctgcatataatatgcaatatcc 6558826  T
Q  151 ctgctaattgagctaagctcacggg 175  Q
    || | ||||||||||||||||||||    
T  6558825 ctaccaattgagctaagctcacggg 6558801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 7443457 - 7443365
Alignment:
Q  58 gtagcttagtggctggaactcacacatt-taaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtc 149  Q
    ||||| |||||| |||| |||||||||| |||||||| ||||||  ||||||  | |||| || ||| | || ||||||||||||||||||||    
T  7443457 gtagcctagtggttggagctcacacattataaatgtggagaagtggggtgtcaagggttcgaacccctgcccctgcataaattatacaatgtc 7443365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 32550299 - 32550179
Alignment:
Q  52 ggtctagtagcttagtggctggaactcacacatttaaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctc 151  Q
    ||||||||||  | |||||| || |||||||| ||||||||| || |||  |||||  || |||| || ||| | || |||||||||||| |||||||||    
T  32550299 ggtctagtaggctggtggctagagctcacacaattaaatgtggagtagtggggtgtacggggttcgaacccctgcccatgcataaattatgcaatgtctc 32550200  T
Q  152 tgctaattgagctaagctcac 172  Q
    | | || ||| ||||||||||    
T  32550199 taccaactgaactaagctcac 32550179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 39799988 - 39800100
Alignment:
Q  64 tagtggctggaactcacacattt-aaatgtgcagaagtaaggtgtctggagttcaaatcccagtccttgcataaattatacaatgtctctgctaattgag 162  Q
    ||||||||| | ||||||||||| ||||||| ||||||  |||||| || |||| |  ||| | || |||||||||||| || |||| || | || ||||    
T  39799988 tagtggctgaagctcacacattttaaatgtggagaagtggggtgtcaggggttcgagcccctgcccctgcataaattatgcattgtccctaccaactgag 39800087  T
Q  163 ctaagctcacggg 175  Q
    |||||||||||||    
T  39800088 ctaagctcacggg 39800100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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