View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_4 (Length: 634)
Name: NF17787_low_4
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 25 - 616
Target Start/End: Complemental strand, 6351434 - 6350852
Alignment:
| Q |
25 |
tcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccca |
124 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
6351434 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6351335 |
T |
|
| Q |
125 |
tccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgac |
224 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
6351334 |
tccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttgac |
6351244 |
T |
|
| Q |
225 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6351243 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtagtggacg |
6351144 |
T |
|
| Q |
325 |
ttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351143 |
ttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgc |
6351044 |
T |
|
| Q |
425 |
tggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaat |
524 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351043 |
tggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaat |
6350944 |
T |
|
| Q |
525 |
gatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350943 |
gatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
6350852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 24 - 616
Target Start/End: Complemental strand, 6328892 - 6328309
Alignment:
| Q |
24 |
atcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccc |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
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| T |
6328892 |
atcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctacc |
6328793 |
T |
|
| Q |
124 |
atccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttga |
223 |
Q |
| |
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||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
6328792 |
atccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttga |
6328702 |
T |
|
| Q |
224 |
cctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggac |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328701 |
cctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggac |
6328602 |
T |
|
| Q |
324 |
gttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328601 |
gttggaatatgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtg |
6328502 |
T |
|
| Q |
424 |
ctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaa |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6328501 |
ctggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaa |
6328402 |
T |
|
| Q |
524 |
tgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328401 |
tgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
6328309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 25 - 616
Target Start/End: Complemental strand, 6336449 - 6335867
Alignment:
| Q |
25 |
tcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccca |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
6336449 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6336350 |
T |
|
| Q |
125 |
tccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgac |
224 |
Q |
| |
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|||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
6336349 |
tccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttgac |
6336259 |
T |
|
| Q |
225 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336258 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacg |
6336159 |
T |
|
| Q |
325 |
ttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6336158 |
ttggaatatgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgc |
6336059 |
T |
|
| Q |
425 |
tggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaat |
524 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336058 |
tggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaat |
6335959 |
T |
|
| Q |
525 |
gatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6335958 |
gatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaagtttctaattttatct |
6335867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 414 - 600
Target Start/End: Original strand, 6488955 - 6489141
Alignment:
| Q |
414 |
catttttgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
513 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| ||||| | | |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6488955 |
catttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgctggtttatggcgttgaagatg |
6489054 |
T |
|
| Q |
514 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
600 |
Q |
| |
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| ||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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| T |
6489055 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
6489141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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