View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17787_low_5 (Length: 615)

Name: NF17787_low_5
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17787_low_5
NF17787_low_5
[»] chr5 (8 HSPs)
chr5 (16-599)||(28860355-28860938)
chr5 (224-599)||(28874925-28875293)
chr5 (28-288)||(28829760-28830017)
chr5 (361-596)||(28854999-28855233)
chr5 (410-596)||(28829322-28829508)
chr5 (137-291)||(28855457-28855608)
chr5 (447-596)||(27369174-27369323)
chr5 (30-117)||(28855645-28855732)
[»] chr1 (17 HSPs)
chr1 (413-596)||(6498114-6498297)
chr1 (413-596)||(6524863-6525046)
chr1 (413-556)||(6515516-6515659)
chr1 (413-592)||(6503437-6503616)
chr1 (434-594)||(47744429-47744589)
chr1 (414-594)||(47774472-47774652)
chr1 (413-556)||(6511093-6511236)
chr1 (453-596)||(47711912-47712055)
chr1 (453-596)||(47716663-47716806)
chr1 (223-289)||(47770407-47770473)
chr1 (492-594)||(47758812-47758914)
chr1 (222-279)||(6503719-6503776)
chr1 (222-273)||(6511348-6511399)
chr1 (223-275)||(6498403-6498455)
chr1 (516-596)||(47770666-47770746)
chr1 (220-258)||(47774313-47774351)
chr1 (222-275)||(6515945-6515998)
[»] scaffold0341 (4 HSPs)
scaffold0341 (413-592)||(5119-5298)
scaffold0341 (413-556)||(12774-12916)
scaffold0341 (222-279)||(5401-5458)
scaffold0341 (222-258)||(13042-13078)


Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 28860938 - 28860355
Alignment:
Q  16 aagggaaagtattaaaagtaagtctaaggcctacaaacatgaattttttatcactttgttatgaacatggtatctgtttcacctatatatgcaacataac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860938 aagggaaagtattaaaagtaagtctaaggcctacaaacatgaattttttatcactttgttatgaacatggtatctgtttcacctatatatgcaacataac 28860839  T
Q  116 tgnnnnnnnnnnnnnacaaactatggctatatctcagttccttcagcagatgatgaagaaattacaacctttgagtcattacaattaccctttgacactt 215  Q
    ||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860838 tgttttttcttttttacaaactatggctatatctcagttccttcagcagatgatgaagaaattacaacctttgagtcattacaattaccctttgacactt 28860739  T
Q  216 taaaagttgctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgtatatcaggtagttgctttcagatagatataataact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860738 taaaagttgctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgtatatcaggtagttgctttcagatagatataataact 28860639  T
Q  316 agcaaaaataaattagtatatttttaaaatattgtattactttgtcaaaacttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttt 415  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860638 agcaaaaataaattattatatttttaaaatattgtattactttgtcaaaacttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttt 28860539  T
Q  416 tcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28860538 tcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatg 28860439  T
Q  516 gccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttatt 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860438 gccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttatt 28860355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 224 - 599
Target Start/End: Complemental strand, 28875293 - 28874925
Alignment:
Q  224 gctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgtatatcaggtagttgctttcagatagatataataactagcaaaaa 323  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  28875293 gctacaaatgacttctctgattctaataaacttggggaaggtggatttggagctgtata-caggtagttgctttcagataaatatattaactagcaaaaa 28875195  T
Q  324 taaattagtatatttttaaaatattgtattactttgtcaaaacttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttttcagggta 423  Q
    |||||||||||||||||| ||||||||| ||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28875194 taaattagtatatttttagaatattgtaatacttt------acttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttttcagggta 28875101  T
Q  424 ggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaact 523  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  28875100 ggctctctaatggacaaacgatcgctgttaaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaact 28875001  T
Q  524 tcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttatt 599  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28875000 tcaacaccggaatttggttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttatt 28874925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 28 - 288
Target Start/End: Complemental strand, 28830017 - 28829760
Alignment:
Q  28 taaaagtaagtctaaggcctacaaacatgaattttttatcactttgttatgaacatggtatctgtttcacctatatatgcaacataactgnnnnnnnnnn 127  Q
    ||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||   | ||||||||||||||||||||||||||||              
T  28830017 taaaagtaagtttaaggcatccaaacatgagtttattatcactttgttatgaacatg---tatgtttcacctatatatgcaacataactgttttttcttt 28829921  T
Q  128 nnnacaaactatggctatatctcagttccttcagcagatgatgaagaaattacaacctttgagtcattacaattaccctttgacactttaaaagttgcta 227  Q
       |||||||||||| |||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||   |||||||||| ||| ||||||||    
T  28829920 tttacaaactatggccatatctcagttccttcagaagatgatgatgaagctacaacctttgagtcattacaatttaactttgacactataagagttgcta 28829821  T
Q  228 caaatgacttctcagattctaataaacttggggaaggcggatttggagctgtatatcaggt 288  Q
    ||||||| ||||  |||||||||||||||||| |||| |||||||||||||| ||||||||    
T  28829820 caaatgatttctgtgattctaataaacttgggcaaggtggatttggagctgtttatcaggt 28829760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 361 - 596
Target Start/End: Complemental strand, 28855233 - 28854999
Alignment:
Q  361 caaaacttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggtt 460  Q
    ||||| ||||||| |||||||||| ||||||||||| |||| |||||| ||||||| |||||| ||||||||||||||||| ||| || || ||||||||    
T  28855233 caaaatttggctataataaaatat-tttactgtactgacaattagtcgtgtctttttagggtacgctctctaatggacaagtgattgccgtcaaaaggtt 28855135  T
Q  461 gtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaacttcaacaccggaatttagttagactacttggttttact 560  Q
    |||||| ||||||||||||||||||   || |||||||||||| |  | || ||||| ||||||||||| |  |||||||||||  ||||||||||||||    
T  28855134 gtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatcaaaatttagttaggttacttggttttact 28855035  T
Q  561 attgaagggagagaaagactacttgtctatgaattt 596  Q
    || |||||||||||||||||||| ||||||||||||    
T  28855034 atcgaagggagagaaagactactagtctatgaattt 28854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 410 - 596
Target Start/End: Complemental strand, 28829508 - 28829322
Alignment:
Q  410 gtcttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctt 509  Q
    ||||||||||||||| |||||||||||||||| ||| || || |||||||| ||||| |||||||| |||||||||  ||| |||||||| ||||| | |    
T  28829508 gtcttttcagggtagactctctaatggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgt 28829409  T
Q  510 tttatggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
    ||  ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  28829408 ttggtggccaaacttcaacaccgaaatttagttagactccttggttttactgttgaagggagagaaagattacttgtctatgaattt 28829322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 28855608 - 28855457
Alignment:
Q  137 tatggctatatctcagttccttcagcagatgatgaagaaattacaacctttgagtcattacaattaccctttgacactttaaaagttgctacaaatgact 236  Q
    |||||| |||||||||||||||||| | ||||||||   |||| || ||||||||||||||||||   |||||||||| |||||||||||||||||||||    
T  28855608 tatggcaatatctcagttccttcagaaaatgatgaa---attagaaactttgagtcattacaattcaactttgacactgtaaaagttgctacaaatgact 28855512  T
Q  237 tctcagattctaataaacttggggaaggcggatttggagctgtatatcaggtagt 291  Q
    |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28855511 tctctgattctaataaacttggcgaaggcggatttggagctgtttatcaggtagt 28855457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 447 - 596
Target Start/End: Complemental strand, 27369323 - 27369174
Alignment:
Q  447 gctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaacttcaacaccggaatttagttagac 546  Q
    ||||| ||||||||||| |  ||||||| ||||||||||   |||||||| |||||||| |||||  | |||||||||||||| || ||| ||||||| |    
T  27369323 gctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagttaggc 27369224  T
Q  547 tacttggttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
    ||||||||||   | | ||||||||||||||||||||| | |||||||||    
T  27369223 tacttggtttctgtctagaagggagagaaagactacttatttatgaattt 27369174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 28855732 - 28855645
Alignment:
Q  30 aaagtaagtctaaggcctacaaacatgaattttttatcactttgttatgaacatggtatctgtttcacctatatatgcaacataactg 117  Q
    ||||| |||||| || || ||||||| ||||| |||||||||||||||||||| | ||  ||||||||||||||||||||||||||||    
T  28855732 aaagtgagtctagggtctccaaacataaatttattatcactttgttatgaacacgataattgtttcacctatatatgcaacataactg 28855645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 596
Target Start/End: Complemental strand, 6498297 - 6498114
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    ||||||||||||||| || |||||||||| ||| ||||||||||||||||| || | ||| || |||||||||   |||||||||||||| || |||||     
T  6498297 ttttcagggtaggctatccaatggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg 6498198  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
     |||| || ||||||||||| ||||||||||||||||| |||||  |  | ||||| ||||||||| ||||||| |||||||||    
T  6498197 gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaattt 6498114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 413 - 596
Target Start/End: Original strand, 6524863 - 6525046
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    |||||||||||| ||| | |||||||||| ||| | ||| ||||||||||| |   |||||||||||||||||  ||| ||||||||||||||  ||||     
T  6524863 ttttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagtttta 6524962  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
     |||| ||||||||||| || || |||||||| |||||||||||   ||| ||||| ||||||||||||||||| |||||||||    
T  6524963 gtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagagaaagactacttgtatatgaattt 6525046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 413 - 556
Target Start/End: Complemental strand, 6515659 - 6515516
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    |||| ||||||||||||||||||||| ||  |||||| | |||||||| || || |||||||| |||||||||  ||||||||||||||| ||| ||||     
T  6515659 tttttagggtaggctctctaatggactagaaatcgctatcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttc 6515560  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttt 556  Q
     |||| |||||||||||||| |||||||||||| |||| |||||    
T  6515559 ctggctaaacttcaacaccgaaatttagttagattactcggttt 6515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 413 - 592
Target Start/End: Complemental strand, 6503616 - 6503437
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    |||||||||||||||||  |||||||||| | | ||||| |||||||| || || |||||||| |||||||||  ||||||||||||||||||| ||||     
T  6503616 ttttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgttttta 6503517  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatga 592  Q
     | || |||||||||||| | ||| |||||||| |||| ||||||    | ||||| ||||||||||| ||||| |||||    
T  6503516 gttgctaaacttcaacacagaaatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatga 6503437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 434 - 594
Target Start/End: Complemental strand, 47744589 - 47744429
Alignment:
Q  434 tggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaacttcaacaccgg 533  Q
    |||||||| ||| || || ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||  | || || |||||||| ||     
T  47744589 tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 47744490  T
Q  534 aatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaat 594  Q
    ||||||||||||||||||||||||  | | ||||| ||||||||| | |||||||||||||    
T  47744489 aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaat 47744429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 594
Target Start/End: Original strand, 47774472 - 47774652
Alignment:
Q  414 tttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttta 513  Q
    |||||||| | |||| |||||||||||  ||| || || ||||| |||||||   |||||| ||||||||||   || ||||| |||||||| |||||      
T  47774472 tttcagggcaagctccctaatggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttag 47774571  T
Q  514 tggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaat 594  Q
    | |||||||||||||| || ||||||||||| ||||||||||| | | | ||||||||||||| ||| ||| | |||||||    
T  47774572 tagccaaacttcaacatcgaaatttagttaggctacttggtttcagtttagaagggagagaaaaactgcttatttatgaat 47774652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 413 - 556
Target Start/End: Complemental strand, 6511236 - 6511093
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    ||||||||||||| |||| || || |||| | | ||||| |||||||| || || ||||| || |||||||||  ||||||||||||||||||  ||||     
T  6511236 ttttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtattttta 6511137  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttt 556  Q
     |||| |||||||||||||| |||||||| ||| |||| |||||    
T  6511136 gtggctaaacttcaacaccgaaatttagtaagattactcggttt 6511093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 47712055 - 47711912
Alignment:
Q  453 aaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaacttcaacaccggaatttagttagactacttg 552  Q
    ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||  | || || |||||||| || |||||||||||||||||||    
T  47712055 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttg 47711956  T
Q  553 gttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
    |||||  | | ||||| ||||||||| | ||| |||||||||||    
T  47711955 gtttttgtctagaaggaagagaaagattgcttatctatgaattt 47711912  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 47716806 - 47716663
Alignment:
Q  453 aaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttttatggccaaacttcaacaccggaatttagttagactacttg 552  Q
    ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||  | || || |||||||| || ||||||||| |||||||||    
T  47716806 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagtttgactacttg 47716707  T
Q  553 gttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
    |||||  | | ||||| ||||||||| | ||| |||||||||||    
T  47716706 gtttttgtctagaaggaagagaaagattgcttttctatgaattt 47716663  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 47770407 - 47770473
Alignment:
Q  223 tgctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgtatatcaggta 289  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||| |||| ||||    
T  47770407 tgctacaaatgacttctcgaattctaataaacttgggcaaggcggatttggagttgtttatcgggta 47770473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 594
Target Start/End: Complemental strand, 47758914 - 47758812
Alignment:
Q  492 tttaagaatgaagtgctttttatggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatg 591  Q
    ||||||||||||||||||||  | || || |||||||| || ||||||||| ||||||||||||||  | | ||||| ||||||||| | ||||| ||||    
T  47758914 tttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggtttttgtctggaaggaagagaaagattgcttgtttatg 47758815  T
Q  592 aat 594  Q
    |||    
T  47758814 aat 47758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 6503776 - 6503719
Alignment:
Q  222 ttgctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgt 279  Q
    ||||||||||||| |||||||||||| ||||||||||  ||||||||||||| |||||    
T  6503776 ttgctacaaatgatttctcagattctgataaacttggaaaaggcggatttggggctgt 6503719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 6511399 - 6511348
Alignment:
Q  222 ttgctacaaatgacttctcagattctaataaacttggggaaggcggatttgg 273  Q
    ||||||||||||| |||||||||||||||||||||||  |||| ||||||||    
T  6511399 ttgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgg 6511348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 6498455 - 6498403
Alignment:
Q  223 tgctacaaatgacttctcagattctaataaacttggggaaggcggatttggag 275  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||| ||||    
T  6498455 tgctacaaatgacttctcgcattctaatcaacttggagaaggcggattcggag 6498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 596
Target Start/End: Original strand, 47770666 - 47770746
Alignment:
Q  516 gccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaattt 596  Q
    ||||| |||||||| || |||||||||||||| |||||||| | | | |||||||| |||||||| ||| | |||||||||    
T  47770666 gccaagcttcaacatcgaaatttagttagacttcttggtttcagtttagaagggagtgaaagacttcttatttatgaattt 47770746  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 47774313 - 47774351
Alignment:
Q  220 agttgctacaaatgacttctcagattctaataaacttgg 258  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  47774313 agttgctacaagtgacttctccgattctaataaacttgg 47774351  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 6515998 - 6515945
Alignment:
Q  222 ttgctacaaatgacttctcagattctaataaacttggggaaggcggatttggag 275  Q
    ||||||||||||| |||||||||||| ||||||||||  |||| ||||| ||||    
T  6515998 ttgctacaaatgatttctcagattctgataaacttggacaaggaggattcggag 6515945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 413 - 592
Target Start/End: Complemental strand, 5298 - 5119
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    |||||||||||||||||  |||||||||| | | ||||| |||||||| || || |||||||| |||||||||  ||||||||||||||||||| ||||     
T  5298 ttttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgttttta 5199  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttttactattgaagggagagaaagactacttgtctatga 592  Q
     | || |||||||||||| | ||| |||||||| |||| ||||||    | ||||| ||||||||||| ||||| |||||    
T  5198 gttgctaaacttcaacacagaaatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatga 5119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 556
Target Start/End: Complemental strand, 12916 - 12774
Alignment:
Q  413 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttt 512  Q
    ||||||||||||| |||| || || |||| | | ||||| |||||||| || || ||||| || |||||||||  ||||||||||||||||||  ||||     
T  12916 ttttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagt-atttta 12818  T
Q  513 atggccaaacttcaacaccggaatttagttagactacttggttt 556  Q
     |||| |||||||||||||| |||||||| ||| |||| |||||    
T  12817 gtggctaaacttcaacaccgaaatttagtaagattactcggttt 12774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 5458 - 5401
Alignment:
Q  222 ttgctacaaatgacttctcagattctaataaacttggggaaggcggatttggagctgt 279  Q
    ||||||||||||| |||||||||||| ||||||||||  ||||||||||||| |||||    
T  5458 ttgctacaaatgatttctcagattctgataaacttggaaaaggcggatttggggctgt 5401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 13078 - 13042
Alignment:
Q  222 ttgctacaaatgacttctcagattctaataaacttgg 258  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13078 ttgctacaaatgatttctcagattctaataaacttgg 13042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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