View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_6 (Length: 613)
Name: NF17787_low_6
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 100 - 603
Target Start/End: Original strand, 1480921 - 1481423
Alignment:
| Q |
100 |
aagatggtttaactctatcctttgatattgtaataatggtacctaaatgtatatgatagcataaggaaaacaagtttaaacaaattagaaagaaataatt |
199 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1480921 |
aagaaggtttaactctatcctttgatattgtaataatggtacctaaatgtatatgatagcataaggaaatcaagtttaaacaaattagaaagaaataatt |
1481020 |
T |
|
| Q |
200 |
tttagatgaatcatttagggagc-cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccgatcattgttctt |
298 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
1481021 |
tttagatgaatcatttagggagctcctaatatggacctcaaattaaaaggaccaccaatgaacctcaataagtgacaggctacagccggtcattgttctt |
1481120 |
T |
|
| Q |
299 |
caacactcaaaacacaacacatgtttcatctctttcgactaccatgacccattgcttattcttgagaaataagagtatacttgataaatctcagatctat |
398 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1481121 |
caacactcaaaacacagcacatgtttcatctctttcaactaccatgatccattgcttattcttgagaaataagagtatactt--taaatctcagatctat |
1481218 |
T |
|
| Q |
399 |
ctttatcttaggagaacgagaagataaatatcaccttcctctttagactctagtctctaagatcaaatttttcacttccacttgtccctgattttgttga |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
1481219 |
ctttatcttaggagaacgagaagataaatatcaccttcctctttagactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttga |
1481318 |
T |
|
| Q |
499 |
gaaatatgaaacaaaatcagttattttatccttgtacaactccattggcctatgattatttttggaacaagatgttccattttggttccagaaaccacag |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1481319 |
gaaatatgaaacaaaatcagttattttatccttgtacaactccattggcctatgattatttttggaacaagatgttccattttggttccagaaatcacag |
1481418 |
T |
|
| Q |
599 |
gttct |
603 |
Q |
| |
|
||||| |
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|
| T |
1481419 |
gttct |
1481423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 1496329 - 1496445
Alignment:
| Q |
31 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
130 |
Q |
| |
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||||||||||||||||||| ||||||| ||| |||| |||||| | ||||| ||||| || |||| || ||||||||| |||||||||||||||||||| |
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| T |
1496329 |
gtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggtttcactctatcctttgatattgt |
1496428 |
T |
|
| Q |
131 |
aataatggtacctaaat |
147 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
1496429 |
cataatggtacctaaat |
1496445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 1463323 - 1463207
Alignment:
| Q |
33 |
gccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgtaa |
132 |
Q |
| |
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||||||||||| || ||||||| || ||| |||| ||| || ||||||| || || || |||| || |||||||||||||||||||||||||||||| | |
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| T |
1463323 |
gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca |
1463224 |
T |
|
| Q |
133 |
taatggtacctaaatgt |
149 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
1463223 |
taatggtacctacatgt |
1463207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 223 - 603
Target Start/End: Complemental strand, 36701013 - 36700636
Alignment:
| Q |
223 |
cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccgatcattgttcttcaacactcaaaacacaacacatgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |
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|
| T |
36701013 |
cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccggtcattgttcttcaacacacaaaacataacatatgt |
36700914 |
T |
|
| Q |
323 |
ttcatctctttcgactaccatgacccattgcttattcttgagaaataagagtatacttgataaatctcagatctatctttatcttaggagaacgagaaga |
422 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36700913 |
ttcatctctttcaactaccatgacccattgcttattcttgagaaataagagtatactt--taaatctcagatctatctttatcttaggagaatgagaaga |
36700816 |
T |
|
| Q |
423 |
taaatatcaccttcctctttagactctagtctctaagatcaaatttttcacttccacttgtccctgattttgttgagaaatatgaaacaaaatcagttat |
522 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||| | |
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| T |
36700815 |
caaagatcaccttcctcttcagactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttgagaaatatgaaacaaaatcggttct |
36700716 |
T |
|
| Q |
523 |
tttatccttgtacaactccattggcctatgattatttttggaacaagatgttccattttggttccagaaaccacaggttct |
603 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36700715 |
tttatccttgtacaattccattggcct-tgattatttttggaacaagatgttccattttggtttcagaaaccacaggttct |
36700636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 50276861 - 50276748
Alignment:
| Q |
31 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
130 |
Q |
| |
|
|||||||||| || ||||||||||||| ||| |||| |||||| | ||||| ||||||||||| |||| ||||||||| ||||||||||| |||||||| |
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|
| T |
50276861 |
gtgccatgtagctacctagcacaacaccagtagcaaatatctctctcagtttccaactgtctggcattggagatggttttactctatccttggatattgt |
50276762 |
T |
|
| Q |
131 |
aataatggtaccta |
144 |
Q |
| |
|
||||||||||||| |
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|
| T |
50276761 |
cataatggtaccta |
50276748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 26791083 - 26790960
Alignment:
| Q |
31 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
130 |
Q |
| |
|
||||||||||||| || ||||||| || ||| |||| |||||| | ||||| ||||| || || | || |||||||||||||||||||||||||||||| |
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|
| T |
26791083 |
gtgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttgatattgt |
26790984 |
T |
|
| Q |
131 |
aataatggtacctaaatgtatatg |
154 |
Q |
| |
|
||||||||||||| ||| ||||| |
|
|
| T |
26790983 |
cataatggtacctacatgcatatg |
26790960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 13848400 - 13848348
Alignment:
| Q |
222 |
ccctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgac |
274 |
Q |
| |
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|||||||||||||| ||||||||| |||||| | ||||||||||||| |||| |
|
|
| T |
13848400 |
ccctaatatggacctcaaattaaagggaccatgagtgaacctcaacaaatgac |
13848348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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