View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17787_low_7 (Length: 604)
Name: NF17787_low_7
Description: NF17787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17787_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 586
Target Start/End: Original strand, 43813595 - 43814163
Alignment:
| Q |
11 |
aagaatatcattatattgaattggtagataaatttttcggagccaaggaaatagtgaatacttacagcaataaactgtgttttttcagtcataaaaaagg |
110 |
Q |
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| T |
43813595 |
aagaatatcattatattgaattggtagatagatttttcggagccaaggaaatagtgaatacttacagcaataaactgtgttttttcagtcataaaaaagg |
43813694 |
T |
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| Q |
111 |
ggagatttgtatagattttaaaattaaaatgtaaaaaggtggattatttgttctatttctaaagattactccagcagttttcaaaacatggatcctatgc |
210 |
Q |
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| T |
43813695 |
ggagatttgtatagattttaaaattaaaatgtaaaaaggtggattatttgttctatttctaaagattactccagcagttttcaaaacatggatcctatgc |
43813794 |
T |
|
| Q |
211 |
ctagacagcaccggtgcagttattgtagagctgttgtagaggatataagtcccagtttttgttgagtcttcaacttaatacaaaagatgagtcctgttag |
310 |
Q |
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| T |
43813795 |
ctagacagcaccggtgcagttattgtagag-----------gatataagtcccagtttttgttgagtcttcaacttaatacaaaagatgagtcccgttag |
43813883 |
T |
|
| Q |
311 |
ttccagcatccacaaatactgaagaaatcacactacagcctgttattctatcaagaacttgcctttaat----actcatactccatttttcaatcctagg |
406 |
Q |
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| T |
43813884 |
ttccagcatccacaaatactgaagaaatcacactacagcctgttattctatcaagaacttgcctttaatggtaactcatactccatttttcaatcctagg |
43813983 |
T |
|
| Q |
407 |
atttgaagcagttaaataatctggtccaaaacccacccgaggttaccacactttgttgttcaagggggtccttaaagttagctttctcacccaattcttc |
506 |
Q |
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| T |
43813984 |
atttgaagcagttaaataatctggtccaaaacccacccgaggttaccacactttgttgttcaagggggtccttaaagttagctttctcacccaattcttc |
43814083 |
T |
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| Q |
507 |
aaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatgaactag |
586 |
Q |
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| T |
43814084 |
aaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatgaactag |
43814163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 382 - 584
Target Start/End: Original strand, 43821245 - 43821447
Alignment:
| Q |
382 |
tcatactccatttttcaatcctaggatttgaagcagttaaataatctggtccaaaacccacccgaggttaccacactttgttgttcaagggggtccttaa |
481 |
Q |
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| T |
43821245 |
tcatactccatttgtcaatcctaggatctgaagtagttaaacaatcttgtccaaaacccgccagaggccaccgcgccttgtttttcaagggggtccttaa |
43821344 |
T |
|
| Q |
482 |
agttagctttctcacccaattcttcaaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatga |
581 |
Q |
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| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| || |
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| T |
43821345 |
aattagctttctcacccaattcttcaaatgagtccactaaattttgaagccttgctacaaattctatcagaagtgatgtaaatgtcgttagagacaacga |
43821444 |
T |
|
| Q |
582 |
act |
584 |
Q |
| |
|
||| |
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|
| T |
43821445 |
act |
43821447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 382 - 584
Target Start/End: Original strand, 43828711 - 43828913
Alignment:
| Q |
382 |
tcatactccatttttcaatcctaggatttgaagcagttaaataatctggtccaaaacccacccgaggttaccacactttgttgttcaagggggtccttaa |
481 |
Q |
| |
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||||||||||||| |||||||| |||| | ||||||||||| ||||| ||| ||||| || || | || ||| ||||||||||||||||||||||| |
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| T |
43828711 |
tcatactccatttgtcaatcctgggatataaagcagttaaacaatctcctcctaaaccagccagatgctatggcaccttgttgttcaagggggtccttaa |
43828810 |
T |
|
| Q |
482 |
agttagctttctcacccaattcttcaaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatga |
581 |
Q |
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| T |
43828811 |
agttagctttctcacccaattcttcaaatgaatccactaaattttgaagccttgctacaaattcaatcaatagtgatgtaaatgtcgttagagacaacga |
43828910 |
T |
|
| Q |
582 |
act |
584 |
Q |
| |
|
||| |
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|
| T |
43828911 |
act |
43828913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 43803805 - 43803840
Alignment:
| Q |
382 |
tcatactccatttttcaatcctaggatttgaagcag |
417 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
43803805 |
tcatactccttttttcaatcctaggatttgaagcag |
43803840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 43803540 - 43803631
Alignment:
| Q |
112 |
gagatttgtatagattttaaaattaaaatgtaaaaaggtggattatttgttctatttctaaagattactccagcagttttcaaaacatggatc |
204 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| || ||||| ||| |||| ||||| | ||| |||| ||| |||||||||||| |||| |
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| T |
43803540 |
gagatttgtatgcattttaaaaataaaatgtaaaatagtagatta-ttgctctagttctacatattgctcctgcacttttcaaaacatagatc |
43803631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 559
Target Start/End: Complemental strand, 31809978 - 31809878
Alignment:
| Q |
459 |
ttgttgttcaagggggtccttaaagttagctttctcacccaattcttcaaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgat |
558 |
Q |
| |
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|||||||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| || | ||||| ||||| || ||||||||||||| ||||||| |
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| T |
31809978 |
ttgttgttcaagagggtccttaaacttcgctttctcacctaattcttcaaaagaatcaacaaggttttgtagcctagccacaaattcaatcagaagtgat |
31809879 |
T |
|
| Q |
559 |
g |
559 |
Q |
| |
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| |
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|
| T |
31809878 |
g |
31809878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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