View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17788_high_2 (Length: 416)
Name: NF17788_high_2
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17788_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 59 - 401
Target Start/End: Original strand, 2584355 - 2584696
Alignment:
| Q |
59 |
aaactagaaggcccacatatctcttccttgctcctccttaaagctaagtacaatcattttctcttttcacaattccttataaaatgtcttttttaaatat |
158 |
Q |
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| T |
2584355 |
aaactagaaggcccacatatctcttccttgctcctccttaaagctaagtacaatcattttctcttttcacaattccttataaaatgtcttttttaaatat |
2584454 |
T |
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| Q |
159 |
caatttgtatatattactttcaaagttttagcttgcgattcatacaagcaaatgtccannnnnnnnctttcttgcacatcaacttggtggttcactagca |
258 |
Q |
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| T |
2584455 |
caatttgtatatattactttcaaagttttagcttgcgattcatacaagcaaatgtccattttttt-ctttcttgcacatcaacttggtggttcactagca |
2584553 |
T |
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| Q |
259 |
tcaatcaactttctctttcagtatctcataactatatattgcatatacgtattaatacaaacgtttgaaatcatgaaatgtcatattaaacaaatacttt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2584554 |
tcaatcaactttctctttcagtatctcataactatatattgcatatacgtattaatacaaacgtttgaaatcatgaaatgtcatattaaacaaatacttt |
2584653 |
T |
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| Q |
359 |
actagttatgtgatttaactaatcaaaacaactggacccagtt |
401 |
Q |
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| T |
2584654 |
actagttatgtgatttaactaatcaaaacaactggacccagtt |
2584696 |
T |
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