View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17788_high_3 (Length: 290)
Name: NF17788_high_3
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17788_high_3 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 1654170 - 1654426
Alignment:
| Q |
15 |
cagagaccagtggtgatgcggatggttttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggggcgacgaa |
114 |
Q |
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| T |
1654170 |
cagagaccagaggtgatgcggatggttttccatcttcgcaccaccacccaccgccgtttacattgagaaccaaagaaatttggaaagaaggggcggcaga |
1654269 |
T |
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| Q |
115 |
gataaggagttagagagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaat |
214 |
Q |
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| T |
1654270 |
gataaggagttagagagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaat |
1654369 |
T |
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| Q |
215 |
cttattcattcatggatcgtgaactcggttagttctcagattgttcagtcttattta |
271 |
Q |
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| T |
1654370 |
cttattcattcatggatcgtgaactcggttagttctcagattgttcagtcttattta |
1654426 |
T |
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 15049535 - 15049437
Alignment:
| Q |
26 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccg---tttacattgagaaccaaagaaatttggaaagaaggggcgacgaagataag |
120 |
Q |
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| T |
15049535 |
ggtgatgcggatggttgttccatcttcgcaccttcagccaccaccgccgtttacattgtgaaccaaaggaatttggaaagaaggggcgacagagataag |
15049437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 26841489 - 26841401
Alignment:
| Q |
19 |
gaccagtggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggg |
106 |
Q |
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| T |
26841489 |
gaccagtggtgatgcggatggctgttccatattcgcaccatcagccaccaccgtttacattatgaaccaaaagaatttggaaagaaggg |
26841401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 12792845 - 12792810
Alignment:
| Q |
42 |
ttccatcttcgcaccaccagccaccaccgtttacat |
77 |
Q |
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| T |
12792845 |
ttccatcttcgcaccaccagccaccaccatttacat |
12792810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 5745534 - 5745492
Alignment:
| Q |
26 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca |
67 |
Q |
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| T |
5745534 |
ggtgatgcggatggatgttccatcttcgcaccaccagccacca |
5745492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 22334 - 22376
Alignment:
| Q |
26 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca |
67 |
Q |
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| T |
22334 |
ggtgatgcggatggatgttccatcttcgcaccaccagccacca |
22376 |
T |
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