View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17788_low_1 (Length: 643)
Name: NF17788_low_1
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17788_low_1 |
 | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 3704154 - 3704560
Alignment:
| Q |
16 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggagttcttaacattgcctaacatggttatgacactagcatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3704154 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggaggttttaacattgcctaacatggttatgacactagcatcaa |
3704253 |
T |
|
| Q |
116 |
catatgagatgatagcatgaaagatcaattgatcctgtcgtttccagcgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
215 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704254 |
cagatgagatgatagcatgaaggatcaattgatcctgtcgtttccagcgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
3704353 |
T |
|
| Q |
216 |
tataaggtcatatcctactagcagtgcattgaattggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704354 |
tataaggtcatatcctactagcagtgcattgaattggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
3704453 |
T |
|
| Q |
316 |
acatagttagcatttgaggtgattggaatttcagatgtggagggaggcatggtgagatttctggatcggtttacagactaaaccaaaactgctgatacca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704454 |
acatagttagcatttgaggtgattggaatttcagatgtggagggaggcatggtgaaatttctggatcggtttacagactaaaccaaaactgctgatacca |
3704553 |
T |
|
| Q |
416 |
tataaag |
422 |
Q |
| |
|
||||||| |
|
|
| T |
3704554 |
tataaag |
3704560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 487 - 625
Target Start/End: Original strand, 3689922 - 3690056
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3689922 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
3690017 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3690018 |
caaatcaaatctcattgatttggaatgatattgcatgct |
3690056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 487 - 625
Target Start/End: Original strand, 3704625 - 3704759
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704625 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
3704720 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3704721 |
caaatcaattctcattgatttggaatgatattgcatgct |
3704759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 487 - 625
Target Start/End: Original strand, 14195119 - 14195253
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14195119 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcaactgtaacgtacaacaccatcattatgattattaatgcacaattgac |
14195214 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14195215 |
caaatcaaatctcattgatttggaatgatattgcatgct |
14195253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 32069081 - 32068675
Alignment:
| Q |
16 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggagttcttaacattgcctaacatggttatgacactagcatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32069081 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggaggtcttaacattgcctaacatggttatgacactagcatcaa |
32068982 |
T |
|
| Q |
116 |
catatgagatgatagcatgaaagatcaattgatcctgtcgtttccagcgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
215 |
Q |
| |
|
|| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068981 |
cagatgggatgatagcatgaaggatcaattgatcctgtcgtttccaacgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
32068882 |
T |
|
| Q |
216 |
tataaggtcatatcctactagcagtgcattgaattggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068881 |
tataaggtcatatcctactagcagtgcattgaactggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
32068782 |
T |
|
| Q |
316 |
acatagttagcatttgaggtgattggaatttcagatgtggagggaggcatggtgagatttctggatcggtttacagactaaaccaaaactgctgatacca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068781 |
acatagttagcatttgaggtgattggaatttcagatgtggagggaggcatggtgaaatttctggatcggtttacagactaaaccaaaactgctgatacca |
32068682 |
T |
|
| Q |
416 |
tataaag |
422 |
Q |
| |
|
||||||| |
|
|
| T |
32068681 |
tataaag |
32068675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 487 - 625
Target Start/End: Complemental strand, 32074666 - 32074532
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32074666 |
aagagtgataaatacaattgaattgcttgcttg----acatatgcctattgcagctgtaacgtacaacaccatcattatgattattaatgcacaattgac |
32074571 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32074570 |
caaatcaaatctcattgatttggattgatattgcatgct |
32074532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 487 - 625
Target Start/End: Complemental strand, 32068610 - 32068476
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068610 |
aagagtgataaatacaattgaattgcttgcttg----acatatgcctattgcaactgtaacgtacaacaccatcattatgattattaatgcacaattgac |
32068515 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32068514 |
caaatcaaatctcattgatttggattgatattgcatgct |
32068476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 20099102 - 20099508
Alignment:
| Q |
16 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggagttcttaacattgcctaacatggttatgacactagcatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099102 |
attcttgcacgagttttgcttgcaaacatcttagtgaggatgtcccaagcttgtttggaggtcttaacattgcctaacatggttatgacactagcatcaa |
20099201 |
T |
|
| Q |
116 |
catatgagatgatagcatgaaagatcaattgatcctgtcgtttccagcgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
215 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099202 |
cagatgagatgatagcatgaaggatcaattgatcttgtcgtttccatcgagtgtaggctgcatcagtggttgggcatggtttggtgccatcaacataacc |
20099301 |
T |
|
| Q |
216 |
tataaggtcatatcctactagcagtgcattgaattggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099302 |
tataaggtcatatcctactagcagtgcattgaactggacatgccaggcagggaaattgttactggtcagtttcagtgatgattgtgtgttgagggccaca |
20099401 |
T |
|
| Q |
316 |
acatagttagcatttgaggtgattggaatttcagatgtggagggaggcatggtgagatttctggatcggtttacagactaaaccaaaactgctgatacca |
415 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099402 |
acatagttagcatttgatgtgattggaatttcagatgttgagggaggcatggtgaaatttctggatcggtttacagactaaaccaaaactgctgatacca |
20099501 |
T |
|
| Q |
416 |
tataaag |
422 |
Q |
| |
|
||||||| |
|
|
| T |
20099502 |
tataaag |
20099508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 487 - 625
Target Start/End: Original strand, 27996378 - 27996512
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27996378 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcagctgtaacgtacaacaccatcattatgattattaatgcacaattgac |
27996473 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27996474 |
caaatcaaatctcattgatttggattgatattgcatgct |
27996512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 487 - 625
Target Start/End: Original strand, 28082914 - 28083048
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaacgtgcaacaccatcattatgattattaatgcacaattgac |
586 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28082914 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcagctgtaacgttcaacaccatcattatgattattaatgcacaattgac |
28083009 |
T |
|
| Q |
587 |
caaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28083010 |
caaatcaaatctcattgatttggattgatattgcatgct |
28083048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 28097810 - 28097884
Alignment:
| Q |
551 |
caacaccatcattatgattattaatgcacaattgaccaaatcaaatctcattgatttggaatgatattgcatgct |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28097810 |
caacaccatcattatgattattaatgcacaattgaccaaatcaaatctcattgatttggattgatattgcatgct |
28097884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 542 - 623
Target Start/End: Original strand, 20099644 - 20099725
Alignment:
| Q |
542 |
tgtaacgtgcaacaccatcattatgattattaatgcacaattgaccaaatcaaatctcattgatttggaatgatattgcatg |
623 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20099644 |
tgtaacgtacaacaccatcattatggttattaatgcacaattgaccaaatcaaatctcattgatttggattgatattgcatg |
20099725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 20099573 - 20099629
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcagctgtaac |
547 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20099573 |
aagagtgataaatacaattgaattgc----ttgcttgacatatgcctattgcagctgtaac |
20099629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 540
Target Start/End: Original strand, 6022 - 6071
Alignment:
| Q |
487 |
aagagtgataaatacaattgaattgcttgcttgcttgacatatgcctattgcag |
540 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6022 |
aagagtgataaatacaattgaa----ttgcttgcttgacatatgcctattgcag |
6071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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