View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17788_low_2 (Length: 547)

Name: NF17788_low_2
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17788_low_2
NF17788_low_2
[»] chr8 (2 HSPs)
chr8 (19-535)||(15755486-15756014)
chr8 (200-525)||(18945565-18945889)
[»] scaffold0384 (1 HSPs)
scaffold0384 (155-535)||(972-1352)
[»] chr6 (9 HSPs)
chr6 (17-254)||(17118244-17118497)
chr6 (155-332)||(17118516-17118693)
chr6 (221-528)||(13139393-13139713)
chr6 (173-283)||(6340628-6340738)
chr6 (17-151)||(13139790-13139924)
chr6 (42-104)||(26628696-26628758)
chr6 (42-104)||(26734672-26734734)
chr6 (299-365)||(20071689-20071755)
chr6 (413-522)||(17118711-17118820)
[»] chr4 (3 HSPs)
chr4 (170-403)||(17127986-17128219)
chr4 (170-513)||(19805856-19806199)
chr4 (190-242)||(16985044-16985096)
[»] chr2 (3 HSPs)
chr2 (172-447)||(13129009-13129284)
chr2 (173-283)||(28015657-28015767)
chr2 (173-283)||(20485423-20485533)
[»] chr3 (2 HSPs)
chr3 (191-447)||(55308395-55308651)
chr3 (172-280)||(8834467-8834575)
[»] chr5 (2 HSPs)
chr5 (172-447)||(26470317-26470592)
chr5 (170-447)||(16992425-16992702)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 15755486 - 15756014
Alignment:
Q  19 tgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgatgg 118  Q
    |||||||||| ||||||||||||||||||||||||||||    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15755486 tgttagttacacctcttcttgacggttctaactacctcg----gcatcattctatgaaacgcgctttaggcgccaagaacaagctttcctttgttgatgg 15755581  T
Q  119 atctatctcaatccctcctcttgatgatttgaa----------------cgttgtaactacttgctccattcttggattctggattttgtttctcctcaa 202  Q
    |||||||  ||||||||||||||||||||||||                |||||||||| |||| ||||||||||||||||| ||| |||||||||| ||    
T  15755582 atctatcctaatccctcctcttgatgatttgaatcgaagtgtttgggaacgttgtaactccttgatccattcttggattctgaattctgtttctccttaa 15755681  T
Q  203 atcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcattac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15755682 atcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcattat 15755781  T
Q  303 gtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctat 402  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  15755782 gtactactatcaacaatttgaaacaaggaaccaagtttgtgcttgaatacttcactgagttgaaatcactttgggaagagcttaattctcattgtcctat 15755881  T
Q  403 gactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttg 502  Q
    | |||| || |||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  15755882 gcctatgtgcacttgtcctcatccctgtcgttgtgaatccatgagatcagctcgaaattttcgtttggaggaccaaatcattcaatttctcactggtttg 15755981  T
Q  503 aatgataattttggagttgtgaaaacacaggtt 535  Q
    |||||||||||||||||||||||||||||||||    
T  15755982 aatgataattttggagttgtgaaaacacaggtt 15756014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 525
Target Start/End: Complemental strand, 18945889 - 18945565
Alignment:
Q  200 caaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcat 299  Q
    ||||| |||||||| || || |||||||| |||  ||||||||| ||||||||    |||||||| ||||| ||||||||| || |  |  || |||||     
T  18945889 caaattgctcaaactattgtgtttcatgagtacaacattgatgtttggattgaatcacaagaacgtttttcgaaggttgatcgaatttgtgttgcttcac 18945790  T
Q  300 tacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcc 399  Q
    | ||| || | ||||||||||||||||| ||    || | ||  ||||| |||||||| ||| ||||||| |||||||| |||||||| | ||||| |||    
T  18945789 ttcgttcttcaatcaacaatttgaaacagggtgataaatctgaacttgattacttcacagagatgaaatccctttgggaggagcttaactctcatc-tcc 18945691  T
Q  400 tatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagt 499  Q
     ||| |||| || ||||||||| |||| || || ||||||||||||||  | ||||  ||||||    |||| || ||| | ||||||||||||||| ||    
T  18945690 catgcctatgtgtacttgtccttatccatgccgttgtgaatccatgcgtactgctcgcaattttagaatggaagatcaagtgattcaatttctcactggt 18945591  T
Q  500 ttgaatgataattttggagttgtgaa 525  Q
    |||||||| ||||||  |||||||||    
T  18945590 ttgaatgacaatttttcagttgtgaa 18945565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 155 - 535
Target Start/End: Original strand, 972 - 1352
Alignment:
Q  155 tgtaactacttgctccattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 254  Q
    ||||||||| || | |||||||||||  |  ||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  972 tgtaactacatggttcattcttggatcatcaattttgtttctccacaaattgctcaaactatcgtatttcatgaatatgccattgatgtttggattgagc 1071  T
Q  255 ttcaagaacgcttttctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatactt 354  Q
    |||||||||| || || || ||||||| | ||| |||| ||||||||||| |  |||||||||||||||||||| |||| || |||||||||||||||||    
T  1072 ttcaagaacgtttctccaaagttgatataatcataattgcttcattacgttcatctatcaacaatttgaaacaacgaacaaagtttgtgcttgaatactt 1171  T
Q  355 cactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagct 454  Q
    ||||||| ||||||| |||||||||||||| ||||  ||||| |||||| || | || |||||||||||||||| ||| |||||||| ||| | ||| |     
T  1172 cactgagatgaaatctctttgggaagagctcaattcccatcgccctatgcctgtgtgtacttgtcctcatccctatcgttgtgaatctatgaggtcaaca 1271  T
Q  455 caaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataattttggagttgtgaaaacacaggtt 535  Q
    | | | |||| ||||||||||||| | |||||||| || ||| |||||||||| || ||||||||||||||||| ||||||    
T  1272 cgagaatttcgtttggaggaccaagtgattcaattcctaactggtttgaatgacaactttggagttgtgaaaactcaggtt 1352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 17118244 - 17118497
Alignment:
Q  17 tgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgat 116  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  || | ||||| || |||||||| |||||||||||||||    
T  17118244 tgtgatagttacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgat 17118343  T
Q  117 ggatctatctcaatccctcctcttgatgatttgaa-cgt---------------tgtaactacttgctccattcttggattctggattttgtttctcctc 200  Q
    ||||| ||  ||||||||||| ||||||||||||| |||               ||||||||| || |||||| ||||||| || | | |||||||||||    
T  17118344 ggatcaattccaatccctcctattgatgatttgaaccgtagtgcttgggaacactgtaactacctgatccatttttggattttgaactctgtttctcctc 17118443  T
Q  201 aaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 254  Q
    |||| ||||| || || ||||| ||||||||  |||||||||||||||||||||    
T  17118444 aaattgctcagactatagtattccatgaatataccattgatgtatggattgagc 17118497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 155 - 332
Target Start/End: Original strand, 17118516 - 17118693
Alignment:
Q  155 tgtaactacttgctccattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 254  Q
    ||||||||| || |||||||||||||| || | | |||||||| |||||| ||||| || || ||||| |||||||||||||||||||||||||||||||    
T  17118516 tgtaactacctgatccattcttggattttgaactctgtttctcgtcaaattgctcagactatagtattccatgaatacgccattgatgtatggattgagc 17118615  T
Q  255 ttcaagaacgcttttctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaa 332  Q
    ||||||||||| | |||||||||| |||||| | ||||||||| |||| | |||  || ||||| ||||| |||||||    
T  17118616 ttcaagaacgcctctctaaggttggtagagtaataatttcttctttacattctgtcattaacaacttgaagcaaggaa 17118693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 221 - 528
Target Start/End: Complemental strand, 13139713 - 13139393
Alignment:
Q  221 tttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttc----------at----tacgtac 306  Q
    |||||||||||| |||||| ||| |||||||||||||||||||| || ||||| ||||||||||| |||||| ||||          ||    || | |     
T  13139713 tttcatgaatacaccattgttgtctggattgagcttcaagaacgtttctctaatgttgatagagtaagaattgcttctctaatgttgatagggtaagaat 13139614  T
Q  307 tgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgact 406  Q
    |||| ||||||| |||||||||||||| || | ||||||||| ||||| |||||| || |||| |||||  |||| || |||| |||||| || ||  ||    
T  13139613 tgct-tcaacaacttgaaacaaggaacaaaatatgtgcttgattactttactgagatgtaatctctttgttaagaactcaattctcatcgcccaatacct 13139515  T
Q  407 atatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatg 506  Q
    || || |||| ||||||||| ||||| |||||||||||| |||| | ||| ||||||| ||| ||||  ||  ||||||| |||||||||   |||||||    
T  13139514 atgtgcacttatcctcatccttgtcgttgtgaatccatgagatcggttcataattttcgtttagaggttcaggtcattcagtttctcactgacttgaatg 13139415  T
Q  507 ataattttggagttgtgaaaac 528  Q
    | |||||||||||| |||||||    
T  13139414 agaattttggagttatgaaaac 13139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 6340628 - 6340738
Alignment:
Q  173 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 272  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||||| || |||||||    
T  6340628 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcaagagcgtttttcta 6340727  T
Q  273 aggttgataga 283  Q
    | |||||||||    
T  6340728 aagttgataga 6340738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 13139924 - 13139790
Alignment:
Q  17 tgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgat 116  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||  | |  || || || |||||||| |||   |||||||||    
T  13139924 tgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttctatgaagcgtgagttgggagcgaagaacaaacttgattttgttgat 13139825  T
Q  117 ggatctatctcaatccctcctcttgatgatttgaa 151  Q
    ||||| ||  |||||||||||  ||||||||||||    
T  13139824 ggatcaattccaatccctcctgctgatgatttgaa 13139790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
Q  42 ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt 104  Q
    |||||||||||||||||||||  |||||||||| || | |||||||| |||||||| ||||||    
T  26628696 ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt 26628758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
Q  42 ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt 104  Q
    |||||||||||||||||||||  |||||||||| || | |||||||| |||||||| ||||||    
T  26734672 ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt 26734734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 20071689 - 20071755
Alignment:
Q  299 ttacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttga 365  Q
    |||||| || ||||||  || ||||||||||  || |||||||||||||| ||||||||||||||||    
T  20071689 ttacgttcttctatcagtaagttgaaacaagatacaaattttgtgcttgactacttcactgagttga 20071755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 522
Target Start/End: Original strand, 17118711 - 17118820
Alignment:
Q  413 acttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataatt 512  Q
    |||||| |||| || ||||| |||||||||||| |||| ||||  ||||||  |||||||||  || ||||||| ||| | ||| | |||||||||| ||    
T  17118711 acttgtgctcacccttgtcgttgtgaatccatgagatcggctcgcaatttttgtttggaggatgaagtcattcagtttttgactcgcttgaatgatactt 17118810  T
Q  513 ttggagttgt 522  Q
    ||| ||||||    
T  17118811 ttgaagttgt 17118820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 170 - 403
Target Start/End: Original strand, 17127986 - 17128219
Alignment:
Q  170 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 269  Q
    ||||| ||||||||| | | ||||||| | ||||| || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  17127986 cattcctggattctgaactatgtttctgcacaaattgcgcaaaccattgtttttcatgaatacgccattgatgtctggattgagcttcaagaactcttct 17128085  T
Q  270 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 369  Q
    ||||||||||||||||  | ||| || |  | ||| || | ||||||||| | |||||||| || ||   ||||||||| ||||||||  || |||| ||    
T  17128086 ctaaggttgatagagttcgtattgctactcttcgttctacaatcaacaatcttaaacaaggtactaagactgtgcttgattacttcacatagatgaagtc 17128185  T
Q  370 gctttgggaagagcttaattttcatcgtcctatg 403  Q
     |||||||| ||||| ||||  ||||| ||||||    
T  17128186 tctttgggaggagctcaattcacatcgccctatg 17128219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 513
Target Start/End: Complemental strand, 19806199 - 19805856
Alignment:
Q  170 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 269  Q
    |||||||||||| || | |  |||||||| ||||| || |||||||  || ||||||||||||||||||||||| ||||||||||||||| || | ||||    
T  19806199 cattcttggattttgaactcagtttctccacaaattgcgcaaaccactgtttttcatgaatacgccattgatgtttggattgagcttcaaaaatgttttt 19806100  T
Q  270 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 369  Q
    | |||||| | |||||    ||| || |  | | | || | ||||||||| |  ||||||| || || | | | ||||| |||||||| ||| |||||||    
T  19806099 caaaggttcacagagttcatattgctactcttcattctacaatcaacaatctttaacaaggtactaagtctattcttgattacttcacagagatgaaatc 19806000  T
Q  370 gctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttg 469  Q
     |||||||| ||||| ||||  ||||| |||||| ||  ||| ||||||||  |||| ||||||||||| ||  ||||  | ||| || | |||||  ||    
T  19805999 tctttgggaggagctcaattcacatcgccctatgcctgcatgcacttgtccctatccatgtcgctgtgagtctgtgcgtgctgctaaagaatttcacatg 19805900  T
Q  470 gaggaccaaatcattcaatttctcactagtttgaatgataattt 513  Q
    || ||  || | ||||||||||||||||| ||||||||||||||    
T  19805899 gaagattaagtgattcaatttctcactagattgaatgataattt 19805856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 16985044 - 16985096
Alignment:
Q  190 tgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatg 242  Q
    |||||| |||||||| ||||||||  |||| ||||||||| ||||||||||||    
T  16985044 tgtttcacctcaaattgctcaaactctcgtttttcatgaaaacgccattgatg 16985096  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 172 - 447
Target Start/End: Original strand, 13129009 - 13129284
Alignment:
Q  172 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 271  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||  | ||||| || ||||||    
T  13129009 ttcttggattattaattctgtttctcctcaaattgctcaaactattgtattccatgaatacgccattgatgtctggattgaattacaagagcgtttttct 13129108  T
Q  272 aaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagt-tgaaatcg 370  Q
    ||||||||| |  |  |  || ||||| ||||| || | || |||||||||||||||||    || | ||| ||||| ||||||||  ||| | |||||     
T  13129109 aaggttgatcgtattcgtgttgcttcactacgttcttccattaacaatttgaaacaaggtgataaatctgttcttgattacttcac-aagtataaaatct 13129207  T
Q  371 ctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 447  Q
    |||||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  13129208 ctttgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 13129284  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 28015657 - 28015767
Alignment:
Q  173 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 272  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||||| || |||||||    
T  28015657 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcaagagcgtttttcta 28015756  T
Q  273 aggttgataga 283  Q
    | |||||||||    
T  28015757 aagttgataga 28015767  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 20485533 - 20485423
Alignment:
Q  173 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 272  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||  | || |||||||    
T  20485533 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcagaagcgtttttcta 20485434  T
Q  273 aggttgataga 283  Q
    | |||||||||    
T  20485433 aagttgataga 20485423  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 447
Target Start/End: Original strand, 55308395 - 55308651
Alignment:
Q  191 gtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaa 290  Q
    |||||||||||||| |||||||| || || |||||||||| |||||||||||| ||||||||  | ||||| || ||||||||||||||| |  |  |      
T  55308395 gtttctcctcaaattgctcaaactattgtctttcatgaatccgccattgatgtttggattgaattgcaagagcgtttttctaaggttgatcgtattcgtg 55308494  T
Q  291 tttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattt 390  Q
    || ||||| ||||| || | || |||||| ||||||||||    || | ||| ||||| |||||||| ||| | ||||| || ||||| || |||||||     
T  55308495 ttgcttcactacgttcttccattaacaatctgaaacaaggtgataaatctgttcttgattacttcacagagatcaaatctctatgggaggaacttaattc 55308594  T
Q  391 tcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 447  Q
    ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  55308595 tcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 55308651  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 8834467 - 8834575
Alignment:
Q  172 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 271  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| || || |||||||||| |||||||||||| ||||||||  | ||||| || ||||||    
T  8834467 ttcttggattattaattatgtttctcctcaaattgctcaaactattgtctttcatgaatccgccattgatgtttggattgaattgcaagagcgtttttct 8834566  T
Q  272 aaggttgat 280  Q
    |||||||||    
T  8834567 aaggttgat 8834575  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 447
Target Start/End: Original strand, 26470317 - 26470592
Alignment:
Q  172 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 271  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| ||  | |||||||||| |||||||||||| ||||||||  | ||||| || ||||||    
T  26470317 ttcttggattattaattctgtttctcctcaaattgctcaaactattatctttcatgaatccgccattgatgtctggattgaattgcaagagcgtttttct 26470416  T
Q  272 aaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgc 371  Q
    ||||||||| |  |  |  || ||||| | ||| || | || |||||| ||||||||||    || | ||| ||||| |||||||| ||| | ||||| |    
T  26470417 aaggttgatcgtattcgtgttgcttcactgcgttcttccattaacaatctgaaacaaggtgataaatctgttcttgattacttcacagagatcaaatctc 26470516  T
Q  372 tttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 447  Q
    | ||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  26470517 tatgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 26470592  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 447
Target Start/End: Complemental strand, 16992702 - 16992425
Alignment:
Q  170 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 269  Q
    |||||||||||| || | | ||||||||  ||||| || ||||| || || ||||| |||| |||||||||||| |||||||||||||| || || ||||    
T  16992702 cattcttggattttgaactctgtttctctgcaaattgcacaaacaattgtttttcacgaattcgccattgatgtttggattgagcttcaggagcgttttt 16992603  T
Q  270 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 369  Q
    |||| ||||||||| |  | ||  ||||  | ||  || | ||||| ||| | ||||||||  | || | ||| ||||| || ||||| ||| |||||||    
T  16992602 ctaaagttgatagaattcgtatcgcttctcttcgctcttccatcaataatctcaaacaaggtgctaaatctgtccttgactatttcacagagatgaaatc 16992503  T
Q  370 gctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 447  Q
     |||||||| ||||| ||||  |||||||||||| |||| || |||||||| ||||| || || |||||||| |||||    
T  16992502 tctttgggaggagctcaattcacatcgtcctatgcctatgtgcacttgtccacatccatgccgttgtgaatctatgcg 16992425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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