View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17788_low_3 (Length: 536)

Name: NF17788_low_3
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17788_low_3
NF17788_low_3
[»] chr1 (29 HSPs)
chr1 (19-531)||(28164920-28165438)
chr1 (190-379)||(36437165-36437354)
chr1 (170-380)||(42745536-42745745)
chr1 (174-378)||(31181002-31181206)
chr1 (220-378)||(3574720-3574880)
chr1 (220-372)||(9851809-9851960)
chr1 (175-380)||(32715685-32715889)
chr1 (219-379)||(17971357-17971517)
chr1 (190-378)||(27442338-27442525)
chr1 (170-292)||(31003531-31003652)
chr1 (190-372)||(46443702-46443883)
chr1 (220-372)||(31152435-31152585)
chr1 (230-368)||(39150187-39150324)
chr1 (157-372)||(28469934-28470146)
chr1 (217-328)||(28723957-28724068)
chr1 (219-361)||(42454867-42455009)
chr1 (170-372)||(11435553-11435748)
chr1 (190-285)||(26072953-26073047)
chr1 (183-284)||(948110-948212)
chr1 (190-263)||(45691567-45691640)
chr1 (226-286)||(17988156-17988216)
chr1 (183-338)||(2619645-2619801)
chr1 (208-268)||(25130217-25130277)
chr1 (308-368)||(17988367-17988427)
chr1 (317-372)||(31003673-31003728)
chr1 (323-369)||(52336954-52337000)
chr1 (190-287)||(24547737-24547833)
chr1 (221-290)||(25381403-25381472)
chr1 (190-271)||(34702448-34702533)
[»] chr6 (19 HSPs)
chr6 (170-378)||(180334-180542)
chr6 (190-352)||(34837116-34837278)
chr6 (202-379)||(606595-606772)
chr6 (162-314)||(5428760-5428912)
chr6 (201-371)||(1856752-1856921)
chr6 (172-273)||(12143667-12143768)
chr6 (157-371)||(7926806-7927024)
chr6 (232-361)||(6657890-6658018)
chr6 (170-355)||(9425509-9425695)
chr6 (190-380)||(19780223-19780413)
chr6 (203-300)||(2950133-2950228)
chr6 (220-277)||(31116416-31116473)
chr6 (220-277)||(31117341-31117398)
chr6 (304-372)||(3611562-3611629)
chr6 (217-264)||(2926417-2926464)
chr6 (191-257)||(6454331-6454398)
chr6 (210-292)||(13326443-13326524)
chr6 (193-243)||(24789903-24789953)
chr6 (230-294)||(12453711-12453775)
[»] chr4 (18 HSPs)
chr4 (157-379)||(18838745-18838970)
chr4 (170-355)||(31707298-31707480)
chr4 (220-377)||(33721607-33721768)
chr4 (183-372)||(16572252-16572438)
chr4 (170-377)||(47231519-47231724)
chr4 (220-294)||(30615194-30615268)
chr4 (190-371)||(25376810-25376991)
chr4 (222-382)||(42312399-42312567)
chr4 (231-292)||(27032218-27032279)
chr4 (241-378)||(34319546-34319682)
chr4 (222-371)||(21128097-21128246)
chr4 (170-286)||(32599705-32599820)
chr4 (170-263)||(25382459-25382552)
chr4 (190-275)||(44720548-44720633)
chr4 (226-294)||(4960533-4960601)
chr4 (279-378)||(54863918-54864017)
chr4 (226-272)||(2632485-2632531)
chr4 (250-292)||(40413086-40413128)
[»] chr3 (31 HSPs)
chr3 (157-372)||(40344864-40345078)
chr3 (174-379)||(45261357-45261559)
chr3 (173-379)||(46918412-46918617)
chr3 (220-377)||(17003573-17003729)
chr3 (220-371)||(35455309-35455456)
chr3 (220-378)||(8825355-8825511)
chr3 (184-371)||(55452430-55452618)
chr3 (220-372)||(43320133-43320279)
chr3 (183-275)||(36659281-36659373)
chr3 (190-341)||(30041272-30041423)
chr3 (191-292)||(28695624-28695727)
chr3 (157-270)||(25294788-25294904)
chr3 (269-371)||(32211834-32211936)
chr3 (254-370)||(25295082-25295198)
chr3 (173-311)||(43105095-43105234)
chr3 (213-294)||(24650199-24650280)
chr3 (186-294)||(49983786-49983896)
chr3 (227-295)||(22923708-22923776)
chr3 (217-328)||(30577832-30577943)
chr3 (219-273)||(27828545-27828599)
chr3 (220-273)||(42279232-42279285)
chr3 (282-367)||(49983561-49983646)
chr3 (170-246)||(32211767-32211843)
chr3 (221-293)||(48271745-48271817)
chr3 (162-292)||(20265806-20265937)
chr3 (191-326)||(35104715-35104850)
chr3 (331-381)||(38854605-38854655)
chr3 (321-371)||(47860601-47860651)
chr3 (216-369)||(52596618-52596771)
chr3 (228-273)||(40729772-40729817)
chr3 (213-277)||(37386340-37386404)
[»] chr2 (32 HSPs)
chr2 (171-372)||(38496473-38496674)
chr2 (170-368)||(3268802-3269000)
chr2 (170-368)||(3269361-3269559)
chr2 (151-368)||(3269920-3270140)
chr2 (170-372)||(40442718-40442920)
chr2 (174-379)||(38214106-38214311)
chr2 (170-379)||(40503868-40504077)
chr2 (170-371)||(16781263-16781463)
chr2 (173-370)||(39063542-39063740)
chr2 (174-366)||(40664240-40664433)
chr2 (190-380)||(19285872-19286062)
chr2 (157-294)||(21794914-21795055)
chr2 (190-335)||(32872378-32872523)
chr2 (220-371)||(4015784-4015934)
chr2 (190-372)||(14200333-14200514)
chr2 (170-249)||(21229606-21229685)
chr2 (219-374)||(7011093-7011244)
chr2 (219-328)||(31404989-31405098)
chr2 (150-274)||(34309310-34309437)
chr2 (237-294)||(44883181-44883238)
chr2 (220-292)||(31365037-31365109)
chr2 (183-267)||(2761616-2761702)
chr2 (190-361)||(34195786-34195952)
chr2 (316-380)||(3711930-3711993)
chr2 (174-275)||(9045520-9045621)
chr2 (230-361)||(18423318-18423447)
chr2 (175-334)||(45723868-45724028)
chr2 (213-263)||(13027911-13027961)
chr2 (183-265)||(28239202-28239284)
chr2 (307-368)||(9045639-9045699)
chr2 (189-258)||(37201439-37201508)
chr2 (279-335)||(34262746-34262802)
[»] scaffold0088 (1 HSPs)
scaffold0088 (192-379)||(51266-51453)
[»] chr8 (24 HSPs)
chr8 (170-381)||(8251227-8251438)
chr8 (230-379)||(36054809-36054958)
chr8 (190-378)||(31658847-31659034)
chr8 (217-372)||(1445353-1445508)
chr8 (174-337)||(2207806-2207968)
chr8 (220-378)||(16890264-16890425)
chr8 (220-336)||(2152356-2152473)
chr8 (190-378)||(2520099-2520285)
chr8 (173-380)||(38209468-38209675)
chr8 (226-300)||(30870743-30870817)
chr8 (220-294)||(30653627-30653701)
chr8 (217-367)||(36408178-36408327)
chr8 (221-287)||(40314300-40314366)
chr8 (284-377)||(30112485-30112578)
chr8 (172-292)||(15438258-15438378)
chr8 (172-292)||(15529562-15529682)
chr8 (273-373)||(40694231-40694331)
chr8 (237-372)||(29916965-29917099)
chr8 (220-381)||(11778029-11778193)
chr8 (322-372)||(30654260-30654310)
chr8 (324-378)||(35431579-35431633)
chr8 (237-294)||(27518543-27518600)
chr8 (208-276)||(30105603-30105671)
chr8 (323-371)||(43594503-43594551)
[»] chr7 (28 HSPs)
chr7 (170-380)||(41508092-41508302)
chr7 (220-379)||(20949066-20949224)
chr7 (172-367)||(12485281-12485476)
chr7 (221-371)||(7307441-7307592)
chr7 (172-367)||(12506713-12506908)
chr7 (219-361)||(6549064-6549206)
chr7 (157-276)||(45072448-45072570)
chr7 (231-344)||(18145803-18145916)
chr7 (170-251)||(46101120-46101201)
chr7 (183-379)||(2195798-2195996)
chr7 (213-372)||(10599739-10599898)
chr7 (208-371)||(37048576-37048744)
chr7 (248-371)||(46101236-46101359)
chr7 (190-379)||(14568350-14568539)
chr7 (190-335)||(34470095-34470240)
chr7 (238-367)||(46341502-46341631)
chr7 (170-300)||(14658722-14658850)
chr7 (201-297)||(18117341-18117435)
chr7 (170-300)||(2122421-2122552)
chr7 (190-251)||(943255-943315)
chr7 (236-292)||(15028788-15028844)
chr7 (190-273)||(10409792-10409877)
chr7 (170-244)||(20043604-20043678)
chr7 (313-379)||(42935447-42935513)
chr7 (169-278)||(47682582-47682692)
chr7 (270-374)||(14650144-14650249)
chr7 (200-257)||(20032519-20032576)
chr7 (321-369)||(9183334-9183382)
[»] scaffold0836 (1 HSPs)
scaffold0836 (170-379)||(3015-3224)
[»] chr5 (19 HSPs)
chr5 (170-368)||(18705003-18705201)
chr5 (220-352)||(11983578-11983709)
chr5 (157-333)||(2225619-2225798)
chr5 (173-370)||(3629158-3629355)
chr5 (183-367)||(6688792-6688978)
chr5 (230-367)||(19296165-19296300)
chr5 (230-337)||(7735789-7735896)
chr5 (220-378)||(11691055-11691211)
chr5 (217-371)||(4449438-4449592)
chr5 (190-372)||(27193011-27193191)
chr5 (190-300)||(29948033-29948143)
chr5 (171-292)||(14417936-14418059)
chr5 (163-276)||(35546991-35547104)
chr5 (230-339)||(36482426-36482535)
chr5 (158-238)||(7736664-7736744)
chr5 (262-369)||(3257247-3257354)
chr5 (220-275)||(14917820-14917875)
chr5 (269-372)||(43442043-43442145)
chr5 (269-378)||(35931539-35931646)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-379)||(154333-154542)
[»] scaffold1809 (1 HSPs)
scaffold1809 (170-378)||(443-651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (193-371)||(38802-38979)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 28164920 - 28165438
Alignment:
Q  19 gttaccttaacataacaaatttatatttcattccaaataagacaagaatagcaaatttaaaacagaataataatgaagtttaatatactttctttatcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28164920 gttaccttaacataacaaatttatatttcattccaaataagacatgaatagcaaatttaaaacagaataataatgaagtttaatatactttctttatcaa 28165019  T
Q  119 tggttttatttcaacttcaaaatatatactcctcccctcggtctttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaa 218  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28165020 tggttttatttcaacttcaaaatatatactcctccctccggtccttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgtaa 28165119  T
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||    
T  28165120 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaaaaagataaagacttaatgaggggtaaaaa 28165219  T
Q  319 aatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaataa-nnnnnnnnnaaattttcttataaatagga-cgggg 416  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| |||||    
T  28165220 aatcttttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaaataattttttaaaaaaattttcttataaataggaccgggg 28165319  T
Q  417 acgtaacatcatatttatttcgtttttatctatcacacattttaaaacatacattacataccgcatttgatat----tatcatctttgtatctccaataa 512  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    | |||||||||||||||||||||    
T  28165320 acgtaacatcatatttatttcgcttttatctatcacacatttcaaaacatacattacataccgcatttgatatcatctttcatctttgtatctccaataa 28165419  T
Q  513 ttataccccctttgctact 531  Q
    ||||||||| |||| ||||    
T  28165420 ttataccccttttgttact 28165438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 379
Target Start/End: Original strand, 36437165 - 36437354
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacat-ctactaatatta 288  Q
    ||||||||| | | ||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  |||||||||||||||||||| | ||||||||||    
T  36437165 aaaaccaatgccagcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatatta 36437264  T
Q  289 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    |||||| | ||| | |||||||| || |||| ||||||||||||||||||| | || |||||||||||||||| |||||||||| ||||||    
T  36437265 aaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaagttgtgacattttcttataaataggaccaaa 36437354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 380
Target Start/End: Complemental strand, 42745745 - 42745536
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| ||||||||| | ||||| |||| | | || ||||| || ||||||||||||||||||||||| ||  |||||||||||||    
T  42745745 aagaaaaaccaaaaaacatcaaaaccaatgctatcattaattgtcgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacatta 42745646  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||||| |||||||||||||||  || |  | |||||||| || |||| | |||||| |||||| |||||||  ||| |||||||||||| |||||||    
T  42745645 aatacatccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaacaataattatacttcaaaaattgtgacattttcttataaa 42745547  T
Q  370 tagaaccaaat 380  Q
    ||| |||||||    
T  42745546 taggaccaaat 42745536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 174 - 378
Target Start/End: Original strand, 31181002 - 31181206
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||| |||||| ||||||||| ||||||| ||| ||   || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31181002 aaaaccaaaaaacatcaaaaccaatgcaatcattaatcatat-aactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaata 31181100  T
Q  274 catctactaatatt-aaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||    |||||||| ||||| | ||||| | ||||| | ||| |||| |||||||| |||||||||||  || |||||||||||||||| |||||||||     
T  31181101 cactcgctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaaagtcttttaaacaataactataagttaaaagttgtgacattttcttataaataa 31181200  T
Q  373 aaccaa 378  Q
    ||||||    
T  31181201 aaccaa 31181206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 220 - 378
Target Start/End: Complemental strand, 3574880 - 3574720
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctac--taatattaaaaagataaacacttaatgaggggtagaa 317  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||  |   ||||||||||| |||||||| | |||||||||||||     
T  3574880 tttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagac 3574781  T
Q  318 aaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    |||| |||||| ||||||||| | ||  |||||||||||||||| |||||||||| |||||    
T  3574780 aaattttttaaacaataactacatttgaaaagttgtgacattttcttataaataggaccaa 3574720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 220 - 372
Target Start/End: Original strand, 9851809 - 9851960
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||||||||| | | ||||||||| |||||| ||||| ||||  |||| || |||     
T  9851809 tttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaaca-ttaaatagggataaaaag 9851907  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
     || ||||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  9851908 gtcatttaagcaataactacactttaaaagttgtgacattttcttataaatag 9851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 32715889 - 32715685
Alignment:
Q  175 aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatac 274  Q
    ||||||| || ||| |||||||| |||||||| | || ||| |||||||||||| |||||||||||||| ||| ||||||| |||||||  ||||||||     
T  32715889 aaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatat 32715790  T
Q  275 atctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaa 374  Q
    | | ||||||||| ||||||| |||| | |||||||| |||||||  ||||||| |||||| |  || || ||| ||||||| |||| |||||||||| |    
T  32715789 acccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaat-gaccttaaaatttgtgactttttcttataaatagga 32715691  T
Q  375 ccaaat 380  Q
    ||||||    
T  32715690 ccaaat 32715685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 379
Target Start/End: Original strand, 17971357 - 17971517
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    |||||||||| ||||||||||||||||||  |||||| |||||||  |||||||| |   ||||||||| ||||||  |||| | |||||||| ||||||    
T  17971357 ttttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaa 17971456  T
Q  319 aatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    | |||||||| |||||| ||||| || ||||||||||| |||| |||||||||| ||||||    
T  17971457 agtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaa 17971517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 378
Target Start/End: Original strand, 27442338 - 27442525
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | || |||||||||||||||| |||||||||||||| ||| ||||||| |||||||  |||||||| | | | |||||||      
T  27442338 aaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatatt-g 27442436  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    |||||  |||| | |||||||| ||||||| |||||||| || ||| |||||||| ||||||||||  |||| |||||||||| |||||    
T  27442437 aaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttcttataaataggaccaa 27442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 31003531 - 31003652
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| ||||||||| ||||||| ||| || | || |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  31003531 aagaaaaaccaaaaaacatcaaaaccaatgcaatcattaatcat-gtaactttttgaatatttttacaaatatacctttatagaaaattgttaaacatta 31003629  T
Q  270 aatacatctactaatattaaaaa 292  Q
    |||||||   |||||||||||||    
T  31003630 aatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 372
Target Start/End: Complemental strand, 46443883 - 46443702
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatta 288  Q
    ||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||  || |||||||||||||||||| ||||||  ||||| ||||    
T  46443883 aaaaccaatacaatcataaattaatataatttttttgaatatttttacaaatatacccacat-aaaaattgtgaaacattatatacattcactaacatta 46443785  T
Q  289 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||||  |||  | |||||||| || |||| | ||||||| ||||| || || || ||||||||||| |||| ||||||||||    
T  46443784 aaaaga-gaactataaatgagggataaaaaagttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatag 46443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 31152585 - 31152435
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    ||||||||||||||||||||||||| || |||||||  ||||||||||||||||| |  ||||||||||||| || ||||| | |||||||||||| |||    
T  31152585 tttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaatattaaaa-gagaaacattaaatgaggggtagcaaa 31152489  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattt-tattataaatag 372  Q
     |||||||||||||||| | |  || |||||||||| |||| | ||||||||||    
T  31152488 gtcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaatag 31152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 39150187 - 39150324
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||||   | |||||||||||| | ||||| | ||| |||||||||||| |||||||||    
T  39150187 tttttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  330 caataactatacttttaaagttgtgacattttattataa 368  Q
    ||||||||| || || ||||| |||| ||||| ||||||    
T  39150286 caataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 372
Target Start/End: Complemental strand, 28470146 - 28469934
Alignment:
Q  157 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 253  Q
    |||||||||||||||| ||   |||||| ||| || ||||||||| || ||||  |||| ||||| ||||||||||||||     | |||| || |||||    
T  28470146 cggtctttattataagcaacaaaaccaaaaaatatcaaaaccaatgcattcattgattaatgcaactttttgaatatttt-----acatactctcataaa 28470052  T
Q  254 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgt 353  Q
    |||||||||||||||||||||| | || |||||| |||||| ||||| ||||  | || |||||||  | |||||| |||||||| || || ||| ||||    
T  28470051 aaattgtgaaacattaaatacacccacaaatatttaaaagagaaaca-ttaaataaggatagaaaagacatttaagtaataactacaccttaaaatttgt 28469953  T
Q  354 gacattttattataaatag 372  Q
    |||||||| ||||||||||    
T  28469952 gacatttttttataaatag 28469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 28723957 - 28724068
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 316  Q
    ||||||||||||  ||||||| ||||||||| ||||||| |||||||  |||||||| | | |||||||||||||||||||||| | | |||||| ||||    
T  28723957 aattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttaga 28724056  T
Q  317 aaaatcttttaa 328  Q
    ||| ||||||||    
T  28724057 aaagtcttttaa 28724068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 219 - 361
Target Start/End: Original strand, 42454867 - 42455009
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||   |||||||||||||||| ||||  | ||| |  || | |||    
T  42454867 ttttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaataaaaggcataaa 42454966  T
Q  319 aatcttttaagcaataactatacttttaaagttgtgacatttt 361  Q
    | |||||||| || | |||| || || ||||||||||||||||    
T  42454967 agtcttttaaacattcactacaccttaaaagttgtgacatttt 42455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 372
Target Start/End: Complemental strand, 11435748 - 11435553
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| ||||||||| ||||||| |  || || || |||||| |||||||||||       ||| ||||||||||||||  |||||    
T  11435748 aagaaaaaccaaaaaacatcaaaaccaatgcaatcattatatagtgtaactttttgcatatttttacat------cctcataaaaaattgtgatgcatta 11435655  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||||| |||||||||||||| | ||||| | ||| |  | || |||| | |||||| |||||| ||||| ||  ||||||||||||||| |||||||    
T  11435654 aatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagt-ttttaaacaataattataccttataagttgtgacattttcttataaa 11435556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 26073047 - 26072953
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaata 285  Q
    ||||||||||||||||| |||  ||| |||||||| |||||||||| |||||| |  | ||| |||||||| ||||||||||||||||||||||||    
T  26073047 aaaaccaatacaatcattaatacttgtaatttttt-aatatttttaaaaatattctttgatagaaaattgtcaaacattaaatacatctactaata 26072953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 948110 - 948212
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaa-ttgtgaaacattaaatacatctact 281  Q
    |||||| ||||| |||||||| || ||||| |  || ||||| ||||||||| |||||||||||| |||||||| ||| ||||||||||||||||| |||    
T  948110 aaacatgaaaactaatacaattattaattaataaaactttttaaatattttttcaaatataccctgataaaaaatttgcgaaacattaaatacatccact 948209  T
Q  282 aat 284  Q
    |||    
T  948210 aat 948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 45691567 - 45691640
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 263  Q
    |||||||| ||||| || | || ||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  45691567 aaaaccaagacaattattagttgttgtaattttttgaatatttttacaaatataccctcataaaaatttgtgaa 45691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 17988156 - 17988216
Alignment:
Q  226 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatat 286  Q
    |||| ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||    
T  17988156 aataattttacaaatatatcctcataataaattgtgaaacattaaatacatctgctaatat 17988216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 338
Target Start/End: Original strand, 2619645 - 2619801
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaa-ttgtgaaacattaaatacatctact 281  Q
    ||||||||||| |||||||||||| | |||    || ||||||||||||| | ||| |||||||| |||||||| |||| || |||||||| |||   ||    
T  2619645 aaacattaaaagcaatacaatcattagttaaaataactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctct 2619744  T
Q  282 aatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataacta 338  Q
    ||| || |||| | ||||| | |||||||||||||||||  ||||||  ||||||||    
T  2619745 aatgtttaaaaaacaaacattaaatgaggggtagaaaaaaattttaaataataacta 2619801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 25130277 - 25130217
Alignment:
Q  208 aattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatt 268  Q
    |||||||| || |||||||||| ||||||||||||||| | ||| ||||||||||||||||    
T  25130277 aattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 17988367 - 17988427
Alignment:
Q  308 aggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    ||||||| |||| |||||||| ||||||||| || || |||||||||||||||| ||||||    
T  17988367 aggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 31003673 - 31003728
Alignment:
Q  317 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    |||||||||||| || |||||| || || |||||||||||||||| ||||||||||    
T  31003673 aaaatcttttaaacagtaactacaccttaaaagttgtgacattttcttataaatag 31003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 52336954 - 52337000
Alignment:
Q  323 ttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    ||||||||||||||||||| || |||| ||||||||||| |||||||    
T  52336954 ttttaagcaataactataccttaaaagatgtgacattttcttataaa 52337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 24547833 - 24547737
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt 287  Q
    ||||| ||||||||||| |||| || | | ||||| |||| ||||||||||||| || |||| ||| |||||||  |||||||||||  |||||||||    
T  24547833 aaaactaatacaatcattaatt-ttaccactttttaaataattttacaaatatatccctatagaaagttgtgaacgattaaatacattcactaatatt 24547737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 25381403 - 25381472
Alignment:
Q  221 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaa 290  Q
    |||||||||| |||||| |||||   ||||| || |||||||||||||||||||| ||| | ||||||||    
T  25381403 ttttgaatatctttacagatatattgttatagaacattgtgaaacattaaatacacctattcatattaaa 25381472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 34702533 - 34702448
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatattttt----acaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    ||||||||||||||||| |||||||  || |||| || |||||||    ||||||||||  |||||||||| ||| ||||||||||    
T  34702533 aaaaccaatacaatcatgaattatttaaacttttagactattttttttaacaaatatacttttataaaaaaatgtaaaacattaaa 34702448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 170 - 378
Target Start/End: Complemental strand, 180542 - 180334
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| |||||||||||| |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||| |||| | |||    
T  180542 aagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgtta 180443  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||||| |||||||||||||||| ||||| | ||| ||||||| |||| |||||||||||||||||| |  || ||| |||||| ||||| |||||||    
T  180442 aatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaa 180343  T
Q  370 tagaaccaa 378  Q
    ||| |||||    
T  180342 taggaccaa 180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 190 - 352
Target Start/End: Original strand, 34837116 - 34837278
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||| ||||||| |||| ||||| || || |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | |||||||||    
T  34837116 aaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaa 34837215  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttg 352  Q
    ||||| || || | ||| ||||||| |||| |||||||| ||||| ||| || || |||||||    
T  34837216 aaagacaagcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaagttg 34837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 379
Target Start/End: Original strand, 606595 - 606772
Alignment:
Q  202 atcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacac 301  Q
    ||||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||| | |  ||     
T  606595 atcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcat 606694  T
Q  302 ttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    | ||| |||| |  |||| | |||||||| |||| || || || |||||||||||||||| |||||||||| ||||||    
T  606695 taaataagggattaaaaagtattttaagctataagtacaccttaaaagttgtgacattttcttataaataggaccaaa 606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 5428912 - 5428760
Alignment:
Q  162 tttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtg 261  Q
    ||||| |||||||||||||| ||| || ||||||| | ||||||| |||| ||| |||||||| ||||||||||||||||||| ||| || ||| || ||    
T  5428912 tttataataagaaaaaccaaaaaatatcaaaaccattgcaatcattaattgttgtaattttttaaatatttttacaaatatactcttgtagaaagttatg 5428813  T
Q  262 aaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta 314  Q
    ||||||| ||| |||  ||||||||||||||||||| || | |||||| ||||    
T  5428812 aaacattgaatgcattcactaatattaaaaagataatcattaaatgagaggta 5428760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 371
Target Start/End: Complemental strand, 1856921 - 1856752
Alignment:
Q  201 aatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 300  Q
    |||||| ||||| || |||||||| ||||||||||||||||||| || ||| ||||| || ||||||||||||| || | |||||||||||||| ||| |    
T  1856921 aatcattaattaatgtaattttttaaatatttttacaaatatactctcatacaaaat-gtaaaacattaaatacttccattaatattaaaaagagaaata 1856823  T
Q  301 cttaatgaggggtagaaaaatcttttaagcaataact-atacttttaaagttgtgacattttattataaata 371  Q
     | |||||| | ||||||| |||||||| |||||||| |||| || |||||||||| ||||| |||||||||    
T  1856822 ttaaatgagagatagaaaagtcttttaaacaataactgatac-ttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 12143667 - 12143768
Alignment:
Q  172 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    |||||||||| ||| || ||||||||| ||||||| ||||| || || |||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  12143667 gaaaaaccaaaaaatatcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaa 12143766  T
Q  272 ta 273  Q
    ||    
T  12143767 ta 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 157 - 371
Target Start/End: Complemental strand, 7927024 - 7926806
Alignment:
Q  157 cggtctttattataagaaaa----accaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataa 252  Q
    ||||||||||||||||||||    || || |||||| ||||||||||||  ||| ||||| |  || ||||||||||   ||||||||||||||| ||||    
T  7927024 cggtctttattataagaaaataaaacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataa 7926925  T
Q  253 aaaattgtgaaacattaaataca-tctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagtt 351  Q
    ||||||||||| ||||||||||| |||  |||||||||||||| ||  | | ||| ||||||| | || | || |||  ||||| || ||||| ||||||    
T  7926924 aaaattgtgaagcattaaatacactct-ttaatattaaaaagacaactattaaataaggggtatataagttttctaaaaaataattacactttaaaagtt 7926826  T
Q  352 gtgacattttattataaata 371  Q
    |||| ||||| |||||||||    
T  7926825 gtgatattttcttataaata 7926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 361
Target Start/End: Complemental strand, 6658018 - 6657890
Alignment:
Q  232 tttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagca 331  Q
    |||||||||||||||| ||||||| |||||||  |||||||| | | |||||||||||||||| ||||| | |||||||| ||||||| || ||||| ||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaaca 6657919  T
Q  332 ataactatacttttaaagttgtgacatttt 361  Q
    |||| | |||  ||||||||||||| ||||    
T  6657918 ataaatgtac-cttaaagttgtgacttttt 6657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 355
Target Start/End: Complemental strand, 9425695 - 9425509
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacatt 268  Q
    |||| ||||||| || ||| |||||||| | |||||| | || |||||||||||| |||| ||||||||||||||| || ||||||   ||||||  |||    
T  9425695 aagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattctgtgaagtatt 9425596  T
Q  269 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 355  Q
    ||||| ||  |||| ||| ||||||||||||| | |||||||  || |||| |||||||| |||||| ||||| |  ||||||||||    
T  9425595 aaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtga 9425509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 380
Target Start/End: Complemental strand, 19780413 - 19780223
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| | |||||| | |||||| |||||||| ||| ||||||||||||||||    || ||| |||||||  |||||||| | | |||||| || |    
T  19780413 aaaaccaagataatcattagttattgtaatttttttaatgtttttacaaatataccgcattataaatttgtgaagtattaaatatacccactaattttga 19780314  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 380  Q
    ||||| ||||| | |||||||| ||||||| |||||||| |||||| ||||  || |||||||  || |||| ||||| |||| |||||||    
T  19780313 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaat 19780223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 2950133 - 2950228
Alignment:
Q  203 tcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 300  Q
    |||| ||||| || ||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||| | | |||||||| ||||| |||||||    
T  2950133 tcattaattaatgtaattttttgaatatttttacaaatatatcctgat-aaaaattgtgaaacatt-aatatacccactaatatgaaaaatataaaca 2950228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 31116473 - 31116416
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc 277  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||    
T  31116473 tttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaatacatc 31116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 31117398 - 31117341
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc 277  Q
    ||||||||||| |||||||||||||| ||||| | |||||||||||||| ||||||||    
T  31117398 tttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaatacatc 31117341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 3611629 - 3611562
Alignment:
Q  304 aatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    |||||||| ||||||||| |||||| ||||||||||||  |||||||||| ||||||| ||||||||||    
T  3611629 aatgagggatagaaaaatattttaaacaataactatac-cttaaagttgtaacattttcttataaatag 3611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 2926417 - 2926464
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaa 264  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||    
T  2926417 aattgtttgaatatttttacaaatatacttttctaaaaaattgtgaaa 2926464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 6454331 - 6454398
Alignment:
Q  191 aaaccaatacaatcatcaattattgcaatttt-ttgaatatttttacaaatatacccttataaaaaat 257  Q
    ||||||||||  |||| ||||| || |||||| ||||||||||||| ||||||||| |||||||||||    
T  6454331 aaaccaataccgtcattaattagtgtaatttttttgaatatttttagaaatatacctttataaaaaat 6454398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 13326443 - 13326524
Alignment:
Q  210 ttattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    |||||| ||||||| |||||| | ||||| ||||| |||||| ||| |||||||||||| ||||||| |  ||||||||||||    
T  13326443 ttattgtaatttttagaatatctctacaattatacgcttatagaaa-ttgtgaaacattgaatacatttcttaatattaaaaa 13326524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 24789903 - 24789953
Alignment:
Q  193 accaatacaatcatcaattattgcaattttttgaatatttttacaaatata 243  Q
    |||||| ||||||| |||| ||| |||||||| ||||||||||||||||||    
T  24789903 accaatgcaatcattaattgttgtaattttttaaatatttttacaaatata 24789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 12453711 - 12453775
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    ||||||||||||||| || ||||||| || |||||||||||| ||||  | ||||||| ||||||    
T  12453711 tttttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaaga 12453775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 18838970 - 18838745
Alignment:
Q  157 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaat-atttttacaaatatacccttataa 252  Q
    ||||| |||||||||||||   |||||| |||||| |||||||||  |||||| ||||| |  || ||||||||| ||||||||||||||||||| ||||    
T  18838970 cggtccttattataagaaataaaaccaaaaaacatcaaaaccaatgtaatcattaattaatataaatttttgaattatttttacaaatataccctcataa 18838871  T
Q  253 aaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttg 352  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| || | ||||| |||||||||| |||||||| |||||| ||||| || ||||||     
T  18838870 aaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatga-gggtagaaaagtcttttaaacaataattataccttaaaagtta 18838772  T
Q  353 tgacattttattataaatagaaccaaa 379  Q
    ||||||||| | |||||||||||||||    
T  18838771 tgacattttctcataaatagaaccaaa 18838745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 170 - 355
Target Start/End: Original strand, 31707298 - 31707480
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||  |||||||||||| |||| ||||| || || |||||||||||||||||||||||||||| ||||||| || |||| |||      
T  31707298 aagaaaaaccaaaaaacaacaaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat-- 31707395  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 355  Q
     ||||| | |||||||||||||||| ||||| | ||| |||||||||||| |||| ||||||||||||| || || ||||||||||    
T  31707396 -atacacccactaatattaaaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 220 - 377
Target Start/End: Original strand, 33721607 - 33721768
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc----tactaatattaaaaagataaacacttaatgaggggtag 315  Q
    ||||| |||| ||||||||| |||| || ||||||||||||||||||||||||||| |    || || |||||||| |||||||| | || ||| |||||    
T  33721607 tttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacaccaaactaatactattaaaaggataaacattaaacgagaggtag 33721706  T
Q  316 aaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaacca 377  Q
    |||| |||||||| ||||||||| || || ||| |||||||||||| |||||||||| ||||    
T  33721707 aaaagtcttttaaacaataactacacattaaaaattgtgacattttcttataaataggacca 33721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 372
Target Start/End: Complemental strand, 16572438 - 16572252
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 282  Q
    |||||| ||||||||| | ||| | |||| ||| || ||||| || ||||||| ||||||||| ||||| || ||||||||| ||||||||||   ||||    
T  16572438 aaacatcaaaaccaatgctatcgttaattgttgtaactttttaaacatttttaaaaatataccattatagaatattgtgaaatattaaataca---acta 16572342  T
Q  283 atattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    |||||||||| | |  || | |||||||| || |||| ||| |||||||||||||| || || |||||||||||||||| ||||||||||    
T  16572341 atattaaaaatacagtcattaaatgagggataaaaaattctgttaagcaataactacaccttaaaagttgtgacattttcttataaatag 16572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 377
Target Start/End: Original strand, 47231519 - 47231724
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||| ||||| |||||| |||||||||  |||||| ||||| || || ||||||||||||||||||| |||| ||| ||||||| ||||||| |||||    
T  47231519 aagaaataccaaaaaacatgaaaaccaatggaatcattaattaatgtaactttttgaatatttttacaattata-cctcataaaaagttgtgaatcatta 47231617  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    ||||||  |  |||||||| |||||  |||| | ||| || |||| ||||||||||||| |||||| ||||  || |||||  ||||||||| |||||||    
T  47231618 aatacacttgttaatattataaaga-caacattaaataagaggtaaaaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaa 47231716  T
Q  370 tagaacca 377  Q
    || |||||    
T  47231717 taaaacca 47231724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 30615268 - 30615194
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    ||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30615268 tttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaaaga 30615194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 25376810 - 25376991
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | || ||| |||||||||||| ||||||||||||||||||  |||||| |||||||  |||||||| |   || |||||| |    
T  25376810 aaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattga 25376909  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
    |||||| |||| | |||||||| ||||||| |||||||| |||||| ||||| || |||  |||||| |||| || ||||||    
T  25376910 aaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 382
Target Start/End: Original strand, 42312399 - 42312567
Alignment:
Q  222 tttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt-------aaaaagataaacacttaatgaggggta 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||  ||||||||       ||||||| |||||   ||  | || ||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggata 42312498  T
Q  315 gaaaaatcttttaagcaataactatacttttaaagttgtga-cattttattataaatagaaccaaataa 382  Q
    ||||| ||||||||||||||||||||| || ||||||||||  ||||| |||||||||  |||||||||    
T  42312499 gaaaagtcttttaagcaataactataccttaaaagttgtgattatttttttataaataagaccaaataa 42312567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 27032279 - 27032218
Alignment:
Q  231 ttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||    
T  27032279 ttttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaa 27032218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 378
Target Start/End: Complemental strand, 34319682 - 34319546
Alignment:
Q  241 atacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactata 340  Q
    ||||||| |||||||||||| |||||||||||| ||| |  ||||||||||||| ||||| ||||  | ||||||||||   |||||| |||||||   |    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaaca-ttaaataagggtagaaaagctttttaaacaataaccgca 34319584  T
Q  341 cttttaaagttgtgacattttattataaatagaaccaa 378  Q
    |||| ||| |||||||||||| |||||||||| |||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaa 34319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 371
Target Start/End: Complemental strand, 21128246 - 21128097
Alignment:
Q  222 tttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaat 321  Q
    |||||||||||||| |||||||| |||||   ||| ||||||||||  || | |   |||||||| |||||||||||||   |||||||| | ||||| |    
T  21128246 tttgaatatttttataaatatactcttattggaaaatgtgaaacatataacatactcactaatataaaaaagataaacataaaatgagggttggaaaagt 21128147  T
Q  322 cttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
    |||||||  ||||| ||||| || |||||| ||||||||| |||||||||    
T  21128146 cttttaaaaaataaatatacattaaaagttatgacattttcttataaata 21128097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 32599705 - 32599820
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    ||||||||| || |||| | |||| ||||||| |||| ||||| |  || ||||| |||| ||||| ||||||||| | ||||||||||||||| |||||    
T  32599705 aagaaaaacaaaaaaacttcaaaatcaatacattcattaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcatta 32599803  T
Q  270 aatacatctactaatat 286  Q
    |||||||| ||||||||    
T  32599804 aatacatccactaatat 32599820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 25382552 - 25382459
Alignment:
Q  170 aagaaaaaccaagaaa-cattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 263  Q
    |||||||||||| ||| ||| |||| ||| ||||| || |||||| |||||||||||||| |||| |||||||||||||||| |||| |||||||    
T  25382552 aagaaaaaccaaaaaaacatcaaaatcaagacaataattaattatggcaattttttgaatgtttt-acaaatatacccttatgaaaatttgtgaa 25382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 44720548 - 44720633
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 275  Q
    |||| ||||||||||||  |||| || ||  ||||||||||||||| ||||||| ||| |||||||||||  ||||||||||||||    
T  44720548 aaaatcaatacaatcattgattaatgtaacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaataca 44720633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 4960601 - 4960533
Alignment:
Q  226 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    |||||||||||||||||| | ||||| ||| |||||||||||||||||||   |||||| |||||||||    
T  4960601 aatatttttacaaatatatctttatagaaagttgtgaaacattaaatacaatcactaatgttaaaaaga 4960533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Complemental strand, 54864017 - 54863918
Alignment:
Q  279 actaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    ||||||||| ||||||| |||| | |||||| | |||||||  ||||||| |||||| | ||| || ||||||||||| |||| |||||||||| |||||    
T  54864017 actaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggaccaa 54863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 2632531 - 2632485
Alignment:
Q  226 aatatttttacaaatatacccttataaaaaattgtgaaacattaaat 272  Q
    |||||||||||||||||   |||||||||||||||||||||||||||    
T  2632531 aatatttttacaaatatcttcttataaaaaattgtgaaacattaaat 2632485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 40413086 - 40413128
Alignment:
Q  250 taaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  40413086 taaaaaattgtgaaacattaaatatatccactaatatttaaaa 40413128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 157 - 372
Target Start/End: Original strand, 40344864 - 40345078
Alignment:
Q  157 cggtctttattataagaaaaaccaagaaa-cattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaa 255  Q
    ||||| |||||||||||||||  || ||| ||| ||||||||| || ||||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40344864 cggtccttattataagaaaaataaaaaaaacatcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatatacccttataaaaa 40344963  T
Q  256 attgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtga 355  Q
    |||||||| |||||||||| || |||||||||||||||| ||| | | ||||||||||| |||| ||| ||||||||| |||| || || ||||||||||    
T  40344964 attgtgaaccattaaatac-tc-actaatattaaaaagacaaatattaaatgaggggtataaaagtctcttaagcaatgactacaccttaaaagttgtga 40345061  T
Q  356 cattttattataaatag 372  Q
    |||||| ||||| ||||    
T  40345062 cattttcttatagatag 40345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 174 - 379
Target Start/End: Complemental strand, 45261559 - 45261357
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||| |||||| ||||||||| || ||||  |||| || || |||||||| ||||||||||||||||||| |  ||||||||||||||||||||||    
T  45261559 aaaaccaaaaaacatcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaata 45261462  T
Q  274 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaataga 373  Q
    || | ||||||||| |||||| ||||| | ||| |||| ||||||| || ||||||||||||||| |  || |||||||||||||||| ||||||||||     
T  45261461 cacccactaatatttaaaagagaaacattaaat-agggatagaaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataaatagg 45261363  T
Q  374 accaaa 379  Q
    ||||||    
T  45261362 accaaa 45261357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 173 - 379
Target Start/End: Original strand, 46918412 - 46918617
Alignment:
Q  173 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 272  Q
    ||||| ||| |||||| ||||||||| | | ||| |||| ||| || ||||| || ||||||||||||||||||||||| || ||| |||||||||||||    
T  46918412 aaaaatcaaaaaacatcaaaaccaatgccaacattaattgttgtaaatttttaaacatttttacaaatatacccttatagaatattttgaaacattaaat 46918511  T
Q  273 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||  | |||||||||||||| | ||| | ||||| || || |||| ||||||||||||||||||| | || ||| |||||||||||| ||||||||||    
T  46918512 acattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagcaataactat-ccttaaaaattgtgacattttcttataaatag 46918610  T
Q  373 aaccaaa 379  Q
     ||||||    
T  46918611 gaccaaa 46918617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 377
Target Start/End: Original strand, 17003573 - 17003729
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| ||| | ||||||||| |||||| ||||| ||||  |||| || ||||    
T  17003573 tttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaaca-ttaaatagggataaaaaa 17003670  T
Q  320 atcttttaagcaataactatacttttaaagttgtgaca-ttttattataaatagaacca 377  Q
     || ||||||||||||||| || || |||||||||||| |||| |||||||||| ||||    
T  17003671 gtcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 35455456 - 35455309
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||   ||||||||| |||  ||||||| | ||| |||| |||||||    
T  35455456 tttttgaatatttctacaaatatactc--ataaaaaattgtgaaacattaaatacactcactaatatttaaat-ataaacattaaat-agggatagaaaa 35455361  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
     || |||||||||||| || || || |||||||||||||||| |||||||||    
T  35455360 gtcatttaagcaataattacaccttaaaagttgtgacattttcttataaata 35455309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 8825355 - 8825511
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaa--cacttaatgaggggtagaa 317  Q
    ||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||   | ||||||||||   |||||  || | ||||| || |||||    
T  8825355 tttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaa---ataaagtcattaaatgaaggatagaa 8825451  T
Q  318 aaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    || |||||||||||||||||| ||  ||||| |||||||||||| |||||||||| |||||    
T  8825452 aagtcttttaagcaataactacac-cttaaaattgtgacattttcttataaataggaccaa 8825511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 55452618 - 55452430
Alignment:
Q  184 aacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaa 283  Q
    |||||||||| ||||||||| || |||||||| || ||||| |||  |||| ||||||||| | ||   ||||||||||  ||||||||||| |||||||    
T  55452618 aacattaaaatcaatacaattattaattattgtaacttttttaattcttttgcaaatatactcata---aaaattgtgagtcattaaatacacctactaa 55452522  T
Q  284 ta-ttaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaat---aactatacttttaaagttgtgacattttattataaata 371  Q
    || ||||||||| | | | | | |||||| |||||||||||||||||||||   ||||| | ||| |||||||||||||||| |||||||||    
T  55452521 tacttaaaaagacagatattaattgagggatagaaaaatcttttaagcaataaaaactacattttaaaagttgtgacattttcttataaata 55452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 220 - 372
Target Start/End: Original strand, 43320133 - 43320279
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||  ||      |||||||| ||||| | |||  ||| |||||||    
T  43320133 tttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcac------taaaaagacaaacattgaataggggctagaaaa 43320226  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
     |||||||| ||||||| | || || |||||||||||||||| ||||||||||    
T  43320227 gtcttttaaacaataaccacaccttaaaagttgtgacattttcttataaatag 43320279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 36659373 - 36659281
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 275  Q
    |||||| |||| |||||||||| | ||||| || || ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  36659373 aaacatcaaaatcaatacaatcgttaattaatgtaactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaataca 36659281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 30041272 - 30041423
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | |  ||| |||||||||||| |||||| ||||||||||| ||||| | |||||||  |||||||| | | |||||||||||    
T  30041272 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaa 30041371  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatac 341  Q
    ||||| ||||| | | | |||| ||||||| |||||||| |||||| |||||    
T  30041372 aaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatac 30041423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 28695727 - 28695624
Alignment:
Q  191 aaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatat--acccttataaaaaattgtgaaacattaaatacatctactaatatta 288  Q
    ||||||||| |||||| ||||| || || |||||||||||||||||||||||  || |||||||||| ||||||||||||||  |||  |||||||||||    
T  28695727 aaaccaatataatcattaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaaccacagttactaatatta 28695628  T
Q  289 aaaa 292  Q
    ||||    
T  28695627 aaaa 28695624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 25294788 - 25294904
Alignment:
Q  157 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 253  Q
    ||||| |||||||||||||   |||||| |||||| || |||||||||||||| ||||| || || | ||| |||||||||| ||| |||| || |||||    
T  25294788 cggtccttattataagaaacaaaaccaaaaaacatcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactctcataaa 25294887  T
Q  254 aaattgtgaaacattaa 270  Q
    |||||||||||||||||    
T  25294888 aaattgtgaaacattaa 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 32211834 - 32211936
Alignment:
Q  269 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    ||||||| | |||||||||||||||| ||||| | ||| | |||||||||| |||||||| ||||||||| || || |||||||||| ||||| ||||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T
Q  369 ata 371  Q
    |||    
T  32211934 ata 32211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 370
Target Start/End: Original strand, 25295082 - 25295198
Alignment:
Q  254 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgt 353  Q
    ||||||||||||||| |||| | | |||||||||||||||| || || | |||||||| || |||| |||||||| |||||| || || || ||||||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T
Q  354 gacattttattataaat 370  Q
     ||||||| ||||||||    
T  25295182 aacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 43105095 - 43105234
Alignment:
Q  173 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaatttttt-gaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    ||||||||| || ||| ||||  || |||||||| |||| ||| |||||||| |||| |||||||||||||||||| ||||||| |||||||  || |||    
T  43105095 aaaaaccaaaaatcatcaaaattaagacaatcattaattgttgtaatttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaa 43105194  T
Q  272 tacatctactaatattaaaaagataaacacttaatgaggg 311  Q
    || | | ||||||||| ||||||| |||| | ||||||||    
T  43105195 tatacccactaatattgaaaagatcaacattaaatgaggg 43105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 24650280 - 24650199
Alignment:
Q  213 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    ||||||||||||  ||| ||||||||||||||  |||||||||||||||||| ||||||||     ||||||||||||||||    
T  24650280 ttgcaattttttttatacttttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaaga 24650199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 49983896 - 49983786
Alignment:
Q  186 cattaaaaccaatacaatcatcaattattgcaattttttgaa---tatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 282  Q
    |||||||||||| |||||||| | | |||| || ||||||||   | |||||||||||||||||| ||||||| |||||||  |||||||| | | ||||    
T  49983896 cattaaaaccaagacaatcattagtgattgtaa-tttttgaatgttttttttacaaatataccctcataaaaatttgtgaagtattaaatatacccacta 49983798  T
Q  283 atattaaaaaga 294  Q
    ||||||||||||    
T  49983797 atattaaaaaga 49983786  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 22923776 - 22923708
Alignment:
Q  227 atatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagat 295  Q
    ||||||||||||||||||| | ||||||| ||||||   |||||||| | |||||||||||||||||||    
T  22923776 atatttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaagat 22923708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 30577943 - 30577832
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 316  Q
    |||||||| ||| |||||||||||||||| | |||||||   |||||  |||||||| |||||||||| || ||||||  |||| | |||||||| ||||    
T  30577943 aattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatatatctactaatgttgaaaagaccaacattaaatgagggataga 30577844  T
Q  317 aaaatcttttaa 328  Q
    ||  ||||||||    
T  30577843 aacgtcttttaa 30577832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 27828599 - 27828545
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||| | ||||||    
T  27828599 ttttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 42279232 - 42279285
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||| ||||||||    
T  42279232 ttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 49983646 - 49983561
Alignment:
Q  282 aatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 367  Q
    ||||||||||||| ||||| | |||||||| ||||||| |||||||| |||||| | ||  || ||||||||||| |||| |||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 32211767 - 32211843
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccc 246  Q
    ||||||||| || |||||| ||||||||| || |||| ||||| || ||||||||  ||||||||||||||| ||||    
T  32211767 aagaaaaacaaaaaaacatcaaaaccaatgcactcattaattagtgtaattttttttatatttttacaaatacaccc 32211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 48271745 - 48271817
Alignment:
Q  221 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaag 293  Q
    |||||||||||| |||||||||||||| ||  ||| || |||| |||||||| ||  ||||||||||||||||    
T  48271745 ttttgaatatttatacaaatataccctcatggaaagttttgaagcattaaatgcacatactaatattaaaaag 48271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 20265806 - 20265937
Alignment:
Q  162 tttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatattt-ttacaaatatacccttataaaaaattgt 260  Q
    |||||||| |||| ||  || |||||| ||||||||| ||| ||| || | ||| || ||||| ||||||  ||||||||||| ||||||||||| || |    
T  20265806 tttattatgagaagaaaaaaaaaacatcaaaaccaattcaaccattaacttttgtaactttttaaatattacttacaaatatatccttataaaaagttat 20265905  T
Q  261 gaaacattaaatacatctactaatattaaaaa 292  Q
    ||||| ||||||| || || ||||| ||||||    
T  20265906 gaaacgttaaatatatttaataatactaaaaa 20265937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 326
Target Start/End: Complemental strand, 35104850 - 35104715
Alignment:
Q  191 aaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaa 290  Q
    ||||||| ||||| || | || |||||||||||||||| ||| ||||||||||||||  |||||  || |||   |||||||| |   ||||||||| ||    
T  35104850 aaaccaagacaattattagttgttgcaattttttgaatgtttgtacaaatataccctcttaaaattttttgaggtattaaatatacacactaatattgaa 35104751  T
Q  291 aagataaacacttaatgaggggtagaaaaatctttt 326  Q
    ||||  |||| | ||||| || ||||||||||||||    
T  35104750 aagaccaacattaaatgaaggttagaaaaatctttt 35104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 38854655 - 38854605
Alignment:
Q  331 aataactatacttttaaagttgtgacattttattataaatagaaccaaata 381  Q
    ||||| |||||||| ||||||||||  |||| |||||||||||||||||||    
T  38854655 aataaatatactttaaaagttgtgaatttttcttataaatagaaccaaata 38854605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 47860651 - 47860601
Alignment:
Q  321 tcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
    ||||||||| ||||||||||| || |||| ||||||||||| |||||||||    
T  47860651 tcttttaagtaataactataccttaaaagatgtgacattttcttataaata 47860601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 52596618 - 52596771
Alignment:
Q  216 caattttttgaatatttttacaaatatacccttat-aaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta 314  Q
    ||||||||||||||||||||| |||||||| | || |||||||||||||  |||  ||| ||| ||||| | ||||| || ||||| ||||  | |||||    
T  52596618 caattttttgaatatttttacgaatataccatcataaaaaaattgtgaagtatttgatatatccactaaaactaaaaggacaaaca-ttaaataagggta 52596716  T
Q  315 gaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    ||||  | ||||||| |||||||  || || |||||||| | ||||| |||||||    
T  52596717 gaaattttttttaagtaataactgcaccttaaaagttgtaatatttttttataaa 52596771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 40729817 - 40729772
Alignment:
Q  228 tatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  40729817 tatttttacaaatataactttatagaaaattatgaaacattaaata 40729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 37386340 - 37386404
Alignment:
Q  213 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatc 277  Q
    |||||||||||| |||||||||| |||||   |  ||||||||| ||||||| ||||||||||||    
T  37386340 ttgcaattttttaaatatttttataaatacgtctctataaaaaactgtgaaatattaaatacatc 37386404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 171 - 372
Target Start/End: Complemental strand, 38496674 - 38496473
Alignment:
Q  171 agaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaa 270  Q
    ||||||||||| |||||| ||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||| |||||||  || ||||||||||    
T  38496674 agaaaaaccaaaaaacatcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaa 38496575  T
Q  271 atacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 370  Q
    ||||| |||||||||||||||| | ||||  | ||| |||||||||||  |||||||| |||||||||||| || ||| || ||||||||| ||||||||    
T  38496574 atacacctactaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaat 38496475  T
Q  371 ag 372  Q
    ||    
T  38496474 ag 38496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 368
Target Start/End: Complemental strand, 3269000 - 3268802
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| |||| |||| |||  || ||||| |  || |||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  3269000 aagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagcctta 3268901  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    |||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || |||||||||| ||||| ||||||    
T  3268900 aatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 368
Target Start/End: Complemental strand, 3269559 - 3269361
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| |||| |||| |||  || ||||| |  || |||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  3269559 aagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagcctta 3269460  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    |||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || |||||||||| ||||| ||||||    
T  3269459 aatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 368
Target Start/End: Complemental strand, 3270140 - 3269920
Alignment:
Q  151 tcccctcggtctttattata---agaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccct 247  Q
    |||| |||||| ||||||||   ||||||||||| |||||| |||| |||| |||  || ||||| |  || ||||||||||||||||||||||||||||    
T  3270140 tcccttcggtccttattataagaagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatataccct 3270041  T
Q  248 tataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaa 347  Q
    |||||||| ||||||| | ||||||||| ||| |||||||||||| | ||||| | ||| |||||||||||| ||||||| |||||||||| || || ||    
T  3270040 tataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaa 3269941  T
Q  348 agttgtgacattttattataa 368  Q
    |||||||| ||||| ||||||    
T  3269940 agttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 372
Target Start/End: Complemental strand, 40442920 - 40442718
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||| | |||||| |||| ||||  |||||| ||||| |  ||| ||||||||||||||| | ||||||||||||||||| ||||||| |||||    
T  40442920 aagaaaaaccgaaaaacatcaaaatcaatgtaatcattaattagtataatcttttgaatatttttatagatatacccttataaaaagttgtgaagcatta 40442821  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    ||| || |||||||||||||||||||||||| | ||| ||||||| |||| | |||||| |||||| || || || |||||||||||||||| |||||||    
T  40442820 aatgcacctactaatattaaaaagataaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaa 40442721  T
Q  370 tag 372  Q
    |||    
T  40442720 tag 40442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 174 - 379
Target Start/End: Complemental strand, 38214311 - 38214106
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||| |||||| |||||||||||||||||  ||||  | || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  38214311 aaaaccaaaaaacatcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaata 38214212  T
Q  274 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaataga 373  Q
    ||  ||||||||||||||||| ||  | | |||||||| || |||| |||||||| |||||| || || || ||||||||||  |||| |||||||| |     
T  38214211 cacatactaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattgg 38214112  T
Q  374 accaaa 379  Q
    ||||||    
T  38214111 accaaa 38214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 40504077 - 40503868
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||| | |||||| |||| ||||  |||||| ||||| || ||| ||||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  40504077 aagaaaaaccgaaaaacatcaaaatcaatgtaatcattaattagtgtaatcttttgaatatttttacagatataccctcataaaaagttgtgaagcatta 40503978  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    ||| || |||||||||||||||||| ||||| | ||| ||||||| |||| | |||||| |||||| || || || |||||||||||||||| |||||||    
T  40503977 aatgcacctactaatattaaaaagacaaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaa 40503878  T
Q  370 tagaaccaaa 379  Q
    | | ||||||    
T  40503877 tgggaccaaa 40503868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 371
Target Start/End: Complemental strand, 16781463 - 16781263
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    ||||||||||||  ||||| |||||||||  |||||| ||||| |  ||||||||||||| || |||||||||||||| || |||||| |||||||||||    
T  16781463 aagaaaaaccaaataacatcaaaaccaatgtaatcattaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacatta 16781364  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||| |||||||||||| ||||| ||||| | | | ||| |||||||| |||||||| || ||| |||||  ||||||||||||| |||| |||||||    
T  16781363 aatacacctactaatattacaaagacaaacattaactaaggcgtagaaaagtcttttaaacattaattatac-cttaaagttgtgactttttcttataaa 16781265  T
Q  370 ta 371  Q
    ||    
T  16781264 ta 16781263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 173 - 370
Target Start/End: Original strand, 39063542 - 39063740
Alignment:
Q  173 aaaaaccaagaaacattaaaa-ccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    ||||||||| ||||||||||| |||||||||||||  ||||  | || |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39063542 aaaaaccaaaaaacattaaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaa 39063641  T
Q  272 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 370  Q
    ||||   |||||||||||||||| ||  | | ||||||   || |||| |||||||| |||||| || || || ||||||||||  |||| ||||||||    
T  39063642 tacacacactaatattaaaaagagaagtattaaatgagcaatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaat 39063740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 174 - 366
Target Start/End: Complemental strand, 40664433 - 40664240
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||| |||||| ||||||||||||||||| |||||  | || |||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  40664433 aaaaccaaaaaacatcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaata 40664334  T
Q  274 catctactaatatt-aaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattat 366  Q
    ||   || ||| || ||||||| || || | |||||||| || |||| ||||||||  ||||| || ||||| | |||||||| ||||| ||||    
T  40664333 cacacaccaatgttaaaaaagagaagcattaaatgagggatataaaagtcttttaaataataaatacactttaagagttgtgaaattttcttat 40664240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 190 - 380
Target Start/End: Complemental strand, 19286062 - 19285872
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||||||||| || |||| || ||| ||||| |||| ||||||||||||| || |||| ||| ||||||| ||||||||||||  ||||||||| |    
T  19286062 aaaaccaatacaattattaattgttacaactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattga 19285963  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 380  Q
    ||||| ||| | | ||||| || || |||| ||||||| |||||||||| || || ||| |||||||| ||  |||||||||| |||||||    
T  19285962 aaagacaaatattaaatgaaggatataaaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaataggaccaaat 19285872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 294
Target Start/End: Complemental strand, 21795055 - 21794914
Alignment:
Q  157 cggtctttattataagaaa---aaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttat-aa 252  Q
    ||||| |||||||||||||   || ||| |||||| |||||||||| ||||||  ||||  | || |||||||||||||||||||||||||||| || ||    
T  21795055 cggtccttattataagaaacaaaatcaaaaaacatcaaaaccaatataatcattgattaaagaaactttttgaatatttttacaaatataccctcataaa 21794956  T
Q  253 aaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  21794955 aaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 32872523 - 32872378
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | |  ||| |||||||||||| |||||||||||||||||| |||||||||||||||  |||||||| | | |||||||||||    
T  32872523 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaa 32872424  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataa 335  Q
    || || ||||| | ||| |||| | ||||| |||||||| ||||||    
T  32872423 aaggacaaacattaaattagggttggaaaagtcttttaaacaataa 32872378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 220 - 371
Target Start/End: Original strand, 4015784 - 4015934
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||| || || |||||||||||  | ||||||| ||||||||||||| || |||||||||||| ||||| ||||| | | | ||||||||||||    
T  4015784 tttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaactaaggggtagaaaa 4015883  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
     |||||||| || |||||||| | ||| ||||||||| |||| |||||||||    
T  4015884 gtcttttaaacattaactata-tcttagagttgtgactttttcttataaata 4015934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 372
Target Start/End: Original strand, 14200333 - 14200514
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | ||||   |||||||||||| |||||||||||||||||| ||||||| |||||||  |||||||| |   ||||||||| |    
T  14200333 aaaaccaagacaatcattagttatcctaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattga 14200432  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    |||||| |||| | |||||||| || |||| ||||||||  ||||| | ||  || ||||||||||| |||| ||||||||||    
T  14200433 aaagatcaacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaaaagttgtgac-ttttcttataaatag 14200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 21229685 - 21229606
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccctta 249  Q
    |||||||||||| || ||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  21229685 aagaaaaaccaaaaatcattaaaaccaatgcaatcattaattattgtaactttttgaatatttttacaaatatacgctta 21229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 374
Target Start/End: Complemental strand, 7011244 - 7011093
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    |||||||||| ||||||||||||||| || ||||||| |||||||  |||||||| | | ||||||||| |||||||    | | |||||||| ||||||    
T  7011244 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagat----attaaatgagggttagaaa 7011149  T
Q  319 aatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaa 374  Q
    | |||||||| |||||| | ||  || ||| ||||||| |||| ||||||||||||    
T  7011148 agtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatagaa 7011093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 31405098 - 31404989
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    ||||||||||||||||||||||||| ||| ||| ||| || ||||  |||||||| ||  |||||||||||||||| ||| | | |||||||| ||||||    
T  31405098 ttttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaa 31404999  T
Q  319 aatcttttaa 328  Q
    | ||||||||    
T  31404998 agtcttttaa 31404989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 34309437 - 34309310
Alignment:
Q  150 ctcccctcggtctttattataagaaaa---accaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatataccc 246  Q
    ||||| |||||| || |||||||||||   ||||| || ||| |||| ||| |||||||| | | |||| ||||||||||||  ||||||||||||||||    
T  34309437 ctcccttcggtcctttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcattagtgattgtaattttttgaatgcttttacaaatataccc 34309338  T
Q  247 ttataaaaaattgtgaaacattaaatac 274  Q
    | ||||||| |||||||  |||||||||    
T  34309337 tcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 44883181 - 44883238
Alignment:
Q  237 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatacttctactagtatcaaaaaga 44883238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 31365037 - 31365109
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    ||||| || |||||||||||||||| |||||| ||  |||||||| |||||||||||| ||||||||||||||    
T  31365037 ttttttaaaatttttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatattaaaaa 31365109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 2761702 - 2761616
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaa--atatacccttataaaaaattgtgaaacat 267  Q
    ||||||||||||| || ||||||| ||||| || || |||||||||||||||| ||  ||||| ||| |||||||||||||||||||    
T  2761702 aaacattaaaaccgatgcaatcattaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 34195786 - 34195952
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||| ||||| |||||| || |||||||||||||  || | ||||||| | ||| ||||||| ||||||  ||||||||||||||||| | |||||| ||    
T  34195786 aaaatcaatagaatcattaactattgcaattttta-aacacttttacacaaatatccttatagaaaattacgaaacattaaatacatccattaatatcaa 34195884  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacatttt 361  Q
    ||    | ||| | ||||||||||| |||| || |||||  |||||||||| ||| |||||||| |||||||    
T  34195885 aa----atacattaaatgaggggtaaaaaagtcatttaactaataactatattttaaaagttgtaacatttt 34195952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 3711930 - 3711993
Alignment:
Q  316 aaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaat 380  Q
    |||| |||||||| |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  3711930 aaaagtcttttaaacaataactatcctta-aaagttgtgacattttcttataaatagaaccaaat 3711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 9045520 - 9045621
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||| ||| ||| |||||||  ||||||||||| ||||| || | |||||| |||||||||||||||||||| |  ||| ||||| | |||||| |||||    
T  9045520 aaaatcaaaaaatattaaaattaatacaatcattaattaatgtagtttttttaatatttttacaaatataccatagtaacaaattataaaacataaaata 9045619  T
Q  274 ca 275  Q
    ||    
T  9045620 ca 9045621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 361
Target Start/End: Complemental strand, 18423447 - 18423318
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    |||||| | |||||||||| || |||||||||||||||||||||| ||  | ||||||  ||||| ||||| |  |||| || ||||||||| ||||||     
T  18423447 tttttatacatatacccttttagaaaattgtgaaacattaaatacgtccgcgaatatt--aaagacaaacattacatgaaggatagaaaaatattttaaa 18423350  T
Q  330 caataactatacttttaaagttgtgacatttt 361  Q
    |||||| || || || ||| || |||||||||    
T  18423349 caataattacacattaaaatttatgacatttt 18423318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 45723868 - 45724028
Alignment:
Q  175 aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatac 274  Q
    ||||||| || ||| |||||||| |||||||| | ||  |  |||||||||||| || ||||||||||| | | ||||||| || | ||  ||||||||     
T  45723868 aaaccaaaaatcatcaaaaccaaaacaatcattagttgctctaattttttgaatgttgttacaaatatatcttcataaaaatttataaagtattaaatat 45723967  T
Q  275 atctactaatattaaaaagataaacacttaatgagggg-tagaaaaatcttttaagcaata 334  Q
    | ||||||||||| ||||||  || | | ||||||||| || ||||||||||||| |||||    
T  45723968 acctactaatattgaaaagaccaatattaaatgaggggctaaaaaaatcttttaaacaata 45724028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 13027961 - 13027911
Alignment:
Q  213 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaa 263  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||| |||||||    
T  13027961 ttgcaactttttgaatatttttacaaatatatcctcatagaaatttgtgaa 13027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 28239284 - 28239202
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaac 265  Q
    |||||| |||| ||||  |||||| |||||||  ||||||||||||||| || ||||||||| | || | |||||||||||||    
T  28239284 aaacatcaaaatcaatgtaatcattaattattttaattttttgaatattatttcaaatatactcgtacagaaaattgtgaaac 28239202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 9045639 - 9045699
Alignment:
Q  307 gaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    ||||| ||||||| |||||||| |||||| |||||||  |||||||||||||||| ||||||    
T  9045639 gagggatagaaaattcttttaaacaataattatactta-aaagttgtgacattttcttataa 9045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 37201439 - 37201508
Alignment:
Q  189 taaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaatt 258  Q
    |||||| ||||||||||| |||| ||| || ||||  ||||||||||||||||| |  ||||||||||||    
T  37201439 taaaactaatacaatcattaattgttgtaacttttaaaatatttttacaaatatgcttttataaaaaatt 37201508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 34262802 - 34262746
Alignment:
Q  279 actaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataa 335  Q
    |||||||||||||||| ||||| | | |||||| ||||||| |||||||| ||||||    
T  34262802 actaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataa 34262746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 379
Target Start/End: Complemental strand, 51453 - 51266
Alignment:
Q  192 aaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaa 291  Q
    ||||||||||||||| ||||| || ||  |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| | ||||| |||||||    
T  51453 aaccaatacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaa 51354  T
Q  292 agataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    ||| ||  | | |||||||| || |||||||||||||||||||| || || || |||||||||||||||  |||||||||||||||||    
T  51353 agagaattattaaatgagggataaaaaaatcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaaa 51266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 170 - 381
Target Start/End: Complemental strand, 8251438 - 8251227
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| |||||||||||| |||| ||||| || | ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  8251438 aagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcatta 8251339  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||| |   |||||||||||||||| || || | ||| | ||| | |||  ||||||||||||||| || || || |||||||||| ||||| |||||||    
T  8251338 aataaactcactaatattaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatattttcttataaa 8251239  T
Q  370 tagaaccaaata 381  Q
    ||| ||||||||    
T  8251238 taggaccaaata 8251227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 230 - 379
Target Start/End: Complemental strand, 36054958 - 36054809
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    |||||| |||||||||||||| |||||||| |||  |||||||||||| |||||||||||||||| ||||| | | | ||||||| |||| ||||||||     
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  330 caataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    |||||| ||||| || |||||||||||||||| |||||||||| ||||||    
T  36054858 caataaatataccttaaaagttgtgacattttcttataaataggaccaaa 36054809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 190 - 378
Target Start/End: Complemental strand, 31659034 - 31658847
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||| ||||||| |||| ||||| |  ||||||||||||||||||||||||||| ||| ||||||| || || | ||||||||||||| |||| ||||||    
T  31659034 aaaatcaatacactcattaattagtataattttttgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtattaa 31658936  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    ||||| ||||| | ||| | || || |||| |||||||| ||||||||| |  || |||||||||| ||||| ||||||||||||||||    
T  31658935 aaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaa 31658847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 1445508 - 1445353
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 316  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||   ||||||||  |||||| ||||| ||||  |||| ||||    
T  1445508 aattttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaaca-ttaaatagggataga 1445410  T
Q  317 aaaatcttttaagcaataac-tatacttttaaagttgtgacattttattataaatag 372  Q
    ||| || ||||||||||||| || || || |||||||||||||||| ||||||||||    
T  1445409 aaagtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatag 1445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 2207968 - 2207806
Alignment:
Q  174 aaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    ||||| || |||||| ||||||| |||| |||| | ||| || || |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  2207968 aaaacaaaaaaacatcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaata 2207870  T
Q  274 catctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataact 337  Q
    || | | |||||||||||| | ||||| | ||| |||||||||||| ||||| | |||||||||    
T  2207869 cacccattaatattaaaaatacaaacattaaataaggggtagaaaattctttaacgcaataact 2207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 16890264 - 16890425
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatat---taaaaagataaacacttaatgaggggtaga 316  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |   ||||||||   |||||| | ||||| | ||| | |||||||    
T  16890264 tttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaagggtaga 16890363  T
Q  317 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    ||| ||||| || || ||||||||| || |||||||||| |||||  ||||||||| |||||    
T  16890364 aaagtctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaa 16890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 2152473 - 2152356
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt-aaaaagataaacacttaatgaggggtagaaa 318  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    |||||||| ||||||||||||| | ||| |||||||||||    
T  2152473 tttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggtagaaa 2152374  T
Q  319 aatcttttaagcaataac 336  Q
    | ||||||||| ||||||    
T  2152373 agtcttttaagtaataac 2152356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 190 - 378
Target Start/End: Original strand, 2520099 - 2520285
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatct-actaatatta 288  Q
    |||||||||||| |||| ||||| || || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| | |||||||     
T  2520099 aaaaccaatacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatac-tctcaataatattt 2520197  T
Q  289 aaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    |||| |  |||| | |||| | ||||| ||| ||| |||||||||||||| |  || ||| |||||||||||| |||||||| |||||||    
T  2520198 aaaaaaggaacattaaatg-gaggtag-aaagtctcttaagcaataactacatcttaaaatttgtgacattttcttataaattgaaccaa 2520285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 38209468 - 38209675
Alignment:
Q  173 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 272  Q
    ||||| ||| || ||| |||||||| | |||||| | || ||| |||||||| |||||||||| |||||||||||| |||||| |||||||  ||| |||    
T  38209468 aaaaatcaaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaat 38209567  T
Q  273 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    | | | ||||||||| ||||||  |||| | |||||||| |||| || |||||||| |||||| | ||| || ||||||||||| |||| |||||||||     
T  38209568 atacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagttgtgactttttcttataaatat 38209667  T
Q  373 aaccaaat 380  Q
     |||||||    
T  38209668 gaccaaat 38209675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 30870743 - 30870817
Alignment:
Q  226 aatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaaca 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||    
T  30870743 aatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatattaaaatgacaaaca 30870817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 30653627 - 30653701
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||   |||| |||||||||||    
T  30653627 tttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaaga 30653701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 367
Target Start/End: Original strand, 36408178 - 36408327
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 316  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| ||  ||||| || ||| |||||||||||||||| ||||| | || ||||| || |    
T  36408178 aattttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaa 36408277  T
Q  317 aaaatcttttaagcaataactatacttttaaagttgtgacattttattata 367  Q
    ||| | | |||| |||||| | |||  ||||||||||||| |||| |||||    
T  36408278 aaagtttgttaaacaataaatgtac-cttaaagttgtgactttttcttata 36408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 40314366 - 40314300
Alignment:
Q  221 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatatt 287  Q
    |||| |||||||||||||||||| | | |||||||||| ||||||||||||||||||||| ||||||    
T  40314366 ttttaaatatttttacaaatatatcttcataaaaaattatgaaacattaaatacatctacaaatatt 40314300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 30112485 - 30112578
Alignment:
Q  284 tattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaacca 377  Q
    ||||||||||| | ||| | || ||||| || ||||||||||||||||||||||| || || ||| |||||||||||| |||||||||| ||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 15438258 - 15438378
Alignment:
Q  172 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    |||||| ||| |||||| |||| ||||   ||||| |||| ||| ||||||||  | ||||||||||||||| |||| || ||  ||| |||||||||||    
T  15438258 gaaaaatcaaaaaacatcaaaatcaatgttatcattaattgttgtaattttttatacatttttacaaatataaccttttagaatgttgcgaaacattaaa 15438357  T
Q  272 tacatctactaatattaaaaa 292  Q
    |||||| ||||||||||||||    
T  15438358 tacatccactaatattaaaaa 15438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 15529562 - 15529682
Alignment:
Q  172 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    |||||| ||| |||||| |||| ||||   ||||| |||| ||| ||||||||  | ||||||||||||||| |||| || ||  ||| |||||||||||    
T  15529562 gaaaaatcaaaaaacatcaaaatcaatgttatcattaattgttgtaattttttatacatttttacaaatataaccttttagaatgttgcgaaacattaaa 15529661  T
Q  272 tacatctactaatattaaaaa 292  Q
    |||||| ||||||||||||||    
T  15529662 tacatccactaatattaaaaa 15529682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 40694331 - 40694231
Alignment:
Q  273 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||| ||| ||||||||| || |||||||  || |||||||||||| ||||||||||||||| || || |  |||||||||| ||||| ||||||||||    
T  40694331 acatccactgatattaaaatgacaaacactatataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaatag 40694232  T
Q  373 a 373  Q
    |    
T  40694231 a 40694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 372
Target Start/End: Complemental strand, 29917099 - 29916965
Alignment:
Q  237 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataac 336  Q
    ||||||||||||| |||||| |||||| |||||||||||   |||||||||||||| | ||  | | |||||| | ||||||  | ||||||| |||||     
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  337 tatacttttaaagttgtgacattttattataaatag 372  Q
    || | ||| |||||||| ||||||| ||||||||||    
T  29917000 tacattttaaaagttgtaacatttttttataaatag 29916965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 11778193 - 11778029
Alignment:
Q  220 tttttgaatatttttacaaatatac---ccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtaga 316  Q
    ||||||||| |||||| ||||||||   |||||||  || ||| |||| |||||||| || || |||||||||||||| ||||| | ||| |||| ||      
T  11778193 tttttgaatttttttataaatatacggcccttataggaatttgagaaatattaaatatatttattaatattaaaaagacaaacattaaataagggttaag 11778094  T
Q  317 aaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaata 381  Q
    ||| ||||||| | ||||  || |  || ||| ||||||| |||| |||||||||||||||||||    
T  11778093 aaagtcttttacgaaatagatacatcttaaaaattgtgaccttttcttataaatagaaccaaata 11778029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 30654260 - 30654310
Alignment:
Q  322 cttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||    
T  30654260 cttttaagcaataactacactttaaaagttgtgatattttcttatatatag 30654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 35431633 - 35431579
Alignment:
Q  324 tttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
    ||||| |||| |||||| ||| |||||||||||||||| |||||||||| |||||    
T  35431633 tttaaacaatgactataatttaaaagttgtgacattttcttataaataggaccaa 35431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 27518600 - 27518543
Alignment:
Q  237 aaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaaga 294  Q
    |||||| |||| ||||||| |||||| | ||||||| |||| ||||||||||||||||    
T  27518600 aaatatgccctcataaaaagttgtgatatattaaatgcatccactaatattaaaaaga 27518543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 30105603 - 30105671
Alignment:
Q  208 aattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacat 276  Q
    |||| ||| |||||||| || ||||||||||||||||  ||||| ||  |||||||| |||||||||||    
T  30105603 aattgttgtaattttttaaacatttttacaaatatacttttatagaatgttgtgaaatattaaatacat 30105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 43594503 - 43594551
Alignment:
Q  323 ttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
    ||||| |||||||||||||||  |||| ||||||||||| |||||||||    
T  43594503 ttttatgcaataactatacttaaaaagatgtgacattttcttataaata 43594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 170 - 380
Target Start/End: Complemental strand, 41508302 - 41508092
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    ||||||||| || ||||||  ||||||||||| | || ||||| || || ||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  41508302 aagaaaaactaaaaaacatcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcatta 41508203  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||| | |||||||||||||||| ||||| | ||| ||||||| |||| |||||||||||||||||| || || ||| |||||| ||||| |||||      
T  41508202 aatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatt 41508103  T
Q  370 tagaaccaaat 380  Q
    ||| |||||||    
T  41508102 taggaccaaat 41508092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 220 - 379
Target Start/End: Complemental strand, 20949224 - 20949066
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||| | ||| ||||  |||| || ||||    
T  20949224 tttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagaca-ttaaatagggataaaaaa 20949126  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    ||| ||||||||||||||| || || |||||| ||||||||| |||||||||||||||||    
T  20949125 atcatttaagcaataactacaccttaaaagttatgacattttcttataaatagaaccaaa 20949066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 172 - 367
Target Start/End: Complemental strand, 12485476 - 12485281
Alignment:
Q  172 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    |||||||||| |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||||||||| ||||    
T  12485476 gaaaaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaa 12485377  T
Q  272 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 367  Q
    ||||  |||| | |||||||| | | ||| | ||| |||| ||||||| |||||| | ||||||||| || || |||||||| | |||||||||||    
T  12485376 tacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 221 - 371
Target Start/End: Complemental strand, 7307592 - 7307441
Alignment:
Q  221 ttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggta-gaaaa 319  Q
    ||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| | ||||  | ||| ||||| |  ||||    
T  7307592 ttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaaataaggggcataaaaa 7307493  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
    ||||||||| |||||||||  |||| |||||||||||||||| |||||||||    
T  7307492 atcttttaaacaataactactctttaaaagttgtgacattttcttataaata 7307441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 172 - 367
Target Start/End: Complemental strand, 12506908 - 12506713
Alignment:
Q  172 gaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 271  Q
    |||||||||| |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||||||||| ||||    
T  12506908 gaaaaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaa 12506809  T
Q  272 tacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 367  Q
    ||||  |||| | |||||||| | | ||| | ||| |||| ||||||| |||||| | ||||||||| || || |||||||| | ||||| |||||    
T  12506808 tacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 219 - 361
Target Start/End: Original strand, 6549064 - 6549206
Alignment:
Q  219 ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaa 318  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||   ||||||||| || || | | ||| || || |||    
T  6549064 ttttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaa 6549163  T
Q  319 aatcttttaagcaataactatacttttaaagttgtgacatttt 361  Q
    ||||||||||| ||||||||||| || |||||||||| |||||    
T  6549164 aatcttttaagaaataactataccttaaaagttgtgatatttt 6549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 45072448 - 45072570
Alignment:
Q  157 cggtctttattataagaa---aaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 253  Q
    ||||||||||||||||||   |||| || |||||| |||||||||||| | || ||||| |  ||||||||||||||||||| |||||||| || |||||    
T  45072448 cggtctttattataagaagaaaaacaaacaaacatcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaa 45072547  T
Q  254 aaattgtgaaacattaaatacat 276  Q
    ||| |||||| ||||||||||||    
T  45072548 aaactgtgaagcattaaatacat 45072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 18145916 - 18145803
Alignment:
Q  231 ttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagc 330  Q
    |||||||||||||||| |||| ||| |||| ||| |||||||||||| ||||||||||||| ||||| || | |||||   ||||||||||||||||| |    
T  18145916 ttttacaaatatacccgtatagaaagttgtaaaatattaaatacatccactaatattaaaatgataatcattaaatgaaaagtagaaaaatcttttaaac 18145817  T
Q  331 aataactatacttt 344  Q
    ||||| || |||||    
T  18145816 aataattacacttt 18145803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 46101120 - 46101201
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttata 251  Q
    |||||||||||| ||| |||||||| ||||||||||| |||| ||| | |||||| ||||||||||||||||||||||||||    
T  46101120 aagaaaaaccaaaaaatattaaaactaatacaatcattaattgttgtagttttttaaatatttttacaaatatacccttata 46101201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 379
Target Start/End: Complemental strand, 2195996 - 2195798
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 282  Q
    |||||| |||||||||  |||||| || |||| ||| ||||| || | |||||||  ||| ||||| || | || || ||||||||||||||||||| ||    
T  2195996 aaacatcaaaaccaatgtaatcattaactattacaactttttaaacacttttacatgtatgcccttgtagagaactgagaaacattaaatacatctatta 2195897  T
Q  283 atattaaaaagataa--acacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    |||||||||| | ||  ||| | ||||| | |||||||| |||||||| ||||||||| || || |||||| ||| ||||| ||||| |||||| ||||    
T  2195896 atattaaaaaaaaaaatacattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatatatagaatcaaa 2195798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 372
Target Start/End: Original strand, 10599739 - 10599898
Alignment:
Q  213 ttgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgagggg 312  Q
    ||||||| ||||||||  ||||||||||||||||| ||||||  |||||||  |||||||| |   |||| ||||||||||||||||| | ||||| ||     
T  10599739 ttgcaatgttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggt 10599838  T
Q  313 tagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||||| | ||| || |||||| | ||| |  ||||||||||| |||| ||||||||||    
T  10599839 tagaaaagtttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaatag 10599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 371
Target Start/End: Complemental strand, 37048744 - 37048576
Alignment:
Q  208 aattattgcaattttttgaatatttttacaaatatac---ccttataaaaaattgtgaaacattaaata--catctactaatattaaaaagataaacact 302  Q
    ||||| || |||||||||||| ||| ||||||||||    ||| ||||||| | ||||| |||||||||  |  ||| || ||||||||||||||||| |    
T  37048744 aattagtgtaattttttgaatgtttatacaaatatatgtacctcataaaaattcgtgaaccattaaatatcccactaatagtattaaaaagataaacatt 37048645  T
Q  303 taatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
     ||| | |||||||||| |||||||| |||| |||| ||||| |||||||||| ||||| |||||||||    
T  37048644 aaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 46101236 - 46101359
Alignment:
Q  248 tataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaa 347  Q
    |||| ||| |||||||| ||||| |||||| ||||||||||||| || || || | |||||||||||||||| |||||| || |||||||| |  || ||    
T  46101236 tatagaaagttgtgaaatattaagtacatccactaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaa 46101335  T
Q  348 agttgtgacattttattataaata 371  Q
    |||| ||||||||| |||||||||    
T  46101336 agttatgacattttcttataaata 46101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 379
Target Start/End: Complemental strand, 14568539 - 14568350
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||| |||||||| | |||||| ||| |||||||| |||||||||||||||| |  || ||| || ||||  ||| |||| | | |||||| || |    
T  14568539 aaaaccaagacaatcattagttattgtaatattttgaatgtttttacaaatataccgtattataaatttttgaagtattcaatatacccactaattttga 14568440  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    ||||| ||||| | |||||||| ||||||| |||||||| |||||| ||||  || |||||||  || |||| ||||| |||| ||||||    
T  14568439 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 14568350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 34470240 - 34470095
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||| |||||||||||| ||||| |  || ||||||||||||||||||||||||  |   || |||||||||||| ||||||||||   |||||||||||    
T  34470240 aaaatcaatacaatcattaattaattaaactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaa 34470141  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataa 335  Q
    ||||| || || | || ||||| || |||| ||||||||| |||||    
T  34470140 aaagagaagcattaaacgagggataaaaaattcttttaagtaataa 34470095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 367
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  238 aatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataact 337  Q
    ||||||||||  |||||| ||||||| ||||||||||| | |||| ||| ||||| | ||||| | ||| || |||||| || |||||||||||||||||    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  338 atacttttaaagttgtgacattttattata 367  Q
    | || || |||||||||| ||||| |||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 14658722 - 14658850
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||  | |||||| ||| |||||| | ||||| ||| ||||| ||| |||||||||||||||||| |||||||  | ||||  ||||    
T  14658722 aagaaaaaccaaaaaa--tcaaaacctataaaatcattagttattacaactttttaaatgtttttacaaatataccctcataaaaacatatgaagtatta 14658819  T
Q  270 aatacatctactaatattaaaaagataaaca 300  Q
    ||||  || |||| |||||||||||||||||    
T  14658820 aatatttccactagtattaaaaagataaaca 14658850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 18117435 - 18117341
Alignment:
Q  201 aatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataa 297  Q
    |||||| |||||||| || |||||  ||||||| | ||||||||  ||||| |||||||||||| ||||||||||| |||||||||||||| |||||    
T  18117435 aatcattaattattgtaactttttatatatttt-ataaatatacttttatagaaaattgtgaaa-attaaatacatttactaatattaaaatgataa 18117341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 2122552 - 2122421
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaa-ttttttgaatatttttacaaatatacccttataaaaaattgtgaaacatt 268  Q
    |||||||||||| ||||||   |||||||| ||| || ||||| || || ||||||||||||||||||||||| | | |  |||| || ||| || ||||    
T  2122552 aagaaaaaccaaaaaacatcttaaccaatataattattaattaatgtaagttttttgaatatttttacaaatacagcatcgtaaacaaatgttaagcatt 2122453  T
Q  269 aaatacatctactaatattaaaaagataaaca 300  Q
    |||||||   |||||||||||||||| |||||    
T  2122452 aaatacactcactaatattaaaaagacaaaca 2122421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 943315 - 943255
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttata 251  Q
    ||||||||||||||||| |||| ||| |||||||  |||||||||||||| |||||||||||    
T  943315 aaaaccaatacaatcattaattgttgtaattttta-aatatttttacaaacatacccttata 943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 15028844 - 15028788
Alignment:
Q  236 caaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    |||||||||||| || ||||||||||| |||||||||  ||| ||||||||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaatgtatccactaatattaaaaa 15028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 10409877 - 10409792
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaatttttt--gaatatttttacaaatatacccttataaaaaattgtgaaacattaaata 273  Q
    |||||||| |||||||| | || ||||||||||||  |||| |||||| |||||||||||  |||||| |||||||  ||||||||    
T  10409877 aaaaccaaaacaatcattagttgttgcaattttttttgaatgtttttataaatataccctcttaaaaatttgtgaagtattaaata 10409792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 20043604 - 20043678
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatac 244  Q
    ||||||| |||| |||  ||||||| || |||||||| |||| ||| || ||||| |||||||||||||||||||    
T  20043604 aagaaaacccaaaaaattttaaaactaagacaatcattaattgttgtaactttttaaatatttttacaaatatac 20043678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 42935513 - 42935447
Alignment:
Q  313 tagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaaa 379  Q
    |||||||||||||||| |||||| | ||  |  ||||||||||| |||| |||||||||||||||||    
T  42935513 tagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaaa 42935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 47682692 - 47682582
Alignment:
Q  169 taagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttaca-aatatacccttataaaaaattgtgaaacat 267  Q
    ||||||||||||| |||||||||||  |||  | | || ||||| |  |||||||| ||||||| ||   |||||||  ||||||||||||||||| |||    
T  47682692 taagaaaaaccaaaaaacattaaaattaatgtactaattaattagtctaatttttttaatatttataagtaatatacatttataaaaaattgtgaagcat 47682593  T
Q  268 taaatacatct 278  Q
    |||||||||||    
T  47682592 taaatacatct 47682582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 14650144 - 14650249
Alignment:
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaa-tcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    |||| ||| |||| |||||||| |||||||| | |||||||  || ||||| ||||||| ||||||| || |  || ||| |||||||||||| ||||||    
T  14650144 aatatatccactagtattaaaatgataaacattgaatgaggactaaaaaaagtcttttatgcaataaatacatcttaaaaattgtgacattttcttataa 14650243  T
Q  369 atagaa 374  Q
    ||||||    
T  14650244 atagaa 14650249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 20032519 - 20032576
Alignment:
Q  200 caatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaat 257  Q
    ||||||| |||| ||| || ||||| |||||||||||||||||||  |||||||||||    
T  20032519 caatcattaattgttgtaactttttaaatatttttacaaatatactattataaaaaat 20032576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 9183334 - 9183382
Alignment:
Q  321 tcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||| |||||||||||||||| || |||| ||||||||||| |||||||    
T  9183334 tcttctaagcaataactataccttaaaagatgtgacattttcttataaa 9183382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 3224 - 3015
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| |||||| |||||||||||  |||| |||| ||| |  ||||| || ||||||||||| || |||||||| ||  |||||||||||||    
T  3224 aagaaaaaccaaaaaacatcaaaaccaatactgtcattaattcttgtacctttttaaacatttttacaaacatgcccttatagaatgttgtgaaacatta 3125  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||||| |||||||||||||||| ||  | | |||||||| ||||||| |||||||| ||||||||| || || |||||||||||||||| |||||||    
T  3124 aatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataaa 3025  T
Q  370 tagaaccaaa 379  Q
    ||| ||||||    
T  3024 taggaccaaa 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 368
Target Start/End: Complemental strand, 18705201 - 18705003
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||||||| ||||||  ||||||||||||  || ||||| || || |||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  18705201 aagaaaaaccaaaaaacatcgaaaccaatacaactattaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcatta 18705102  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    |||||| ||| |||||||||||| | ||||| | ||| | ||||| |||| ||||||||| |||||||| || || |||||| |||  |||| ||||||    
T  18705101 aatacacctattaatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 11983578 - 11983709
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||| ||||    
T  11983578 tttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaaaaaa 11983676  T
Q  320 atcttttaagcaataactatacttttaaagttg 352  Q
    ||||||||| |||||| || || || |||||||    
T  11983677 atcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 157 - 333
Target Start/End: Complemental strand, 2225798 - 2225619
Alignment:
Q  157 cggtctttattataagaaaaa---ccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaa 253  Q
    ||||||||||||||| |||||   |||| |||||| ||||| |||||||| || ||||| || || ||||  |||||||||||||||||||| | |||||    
T  2225798 cggtctttattataaaaaaaaaaaccaaaaaacatcaaaactaatacaattattaattagtgtaacttttgaaatatttttacaaatataccttcataaa 2225699  T
Q  254 aaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaat 333  Q
    || ||||||||||||||||||| | |||||||||||||| | ||||| | ||| |  ||||||||| |||||||| ||||    
T  2225698 aagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttttaaacaat 2225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 173 - 370
Target Start/End: Original strand, 3629158 - 3629355
Alignment:
Q  173 aaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaat 272  Q
    ||||||||| |||||| |||||||||   || || |||| ||| || ||||| || ||||||||||||||| ||||||| ||  ||||||||||||||||    
T  3629158 aaaaaccaaaaaacatcaaaaccaatgttataattaattgttgtaactttttaaacatttttacaaatataaccttatagaatgttgtgaaacattaaat 3629257  T
Q  273 acatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaat 370  Q
    ||||  |||||||||||||| | |  || | ||| |||| || |||| ||||||||| |||||||| || || |||||||||||||||| ||||||||    
T  3629258 acattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagtaataactacaccttaaaagttgtgacattttcttataaat 3629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 183 - 367
Target Start/End: Complemental strand, 6688978 - 6688792
Alignment:
Q  183 aaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctacta 282  Q
    |||||||||||||||| ||||||| ||||| || || |||||| ||| | ||||||||||||||| |||||||||||| || |||||||||||  |||||    
T  6688978 aaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttacta 6688879  T
Q  283 --atattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattata 367  Q
      |||||||||| | | | | | ||| |||| ||||||| |||||||| ||||||||| || || |||||||||| ||||| |||||    
T  6688878 atatattaaaaacaaacatattaaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttata 6688792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 230 - 367
Target Start/End: Original strand, 19296165 - 19296300
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    |||||||| ||||||||| ||||||| |||| ||| |||||| |||||  |||||||||||| || ||||| | ||| | || ||||||| |||||||||    
T  19296165 tttttacatatataccctcataaaaa-ttgtaaaatattaaacacatccgctaatattaaaatgagaaacattaaat-atggatagaaaagtcttttaag 19296262  T
Q  330 caataactatacttttaaagttgtgacattttattata 367  Q
    ||||||||| ||||| |||||||||||||||| |||||    
T  19296263 caataactacactttaaaagttgtgacatttttttata 19296300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 7735896 - 7735789
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||| | ||||| | ||| |  | ||||||| | |||||||    
T  7735896 tttttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaag 7735797  T
Q  330 caataact 337  Q
     |||||||    
T  7735796 taataact 7735789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 11691055 - 11691211
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaa 319  Q
    |||||||||||||||||||||| | ||| |||||| ||| ||||| ||||||||||   ||||| |||||||||| ||||| | |||||||| |||  ||    
T  11691055 tttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgagggatag--aa 11691152  T
Q  320 atcttttaagcaataactatacttttaaagttgtgacattttattataaatagaaccaa 378  Q
     ||||||||| |||||||| || |  ||| ||| |||||||  |||||||||| |||||    
T  11691153 gtcttttaagaaataactacacctaaaaaattgcgacatttgtttataaataggaccaa 11691211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 4449592 - 4449438
Alignment:
Q  217 aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacact-taatgaggggtag 315  Q
    ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||||| | | ||| |||||||||| ||||| |  ||||| |||||     
T  4449592 aattttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaaacattgaaatga-gggtaa 4449496  T
Q  316 aaaaatcttttaagcaataact--atacttttaaagttgtgacattttattataaata 371  Q
    |||| ||||||||| ||||| |  | || || ||| |||||||||||| |||||||||    
T  4449495 aaaagtcttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 372
Target Start/End: Complemental strand, 27193191 - 27193011
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    |||||||||| |||||| ||||| ||  ||||||   ||||||||||||||||| | | |||||||||| |||||||||||| | |   | | |||||||    
T  27193191 aaaaccaatataatcattaattaatgttatttttg--atatttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaa 27193094  T
Q  290 aaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaatag 372  Q
    ||||| |  || | ||||| || || |||| |||||||| |||||||||||  || |||||||||||||||  ||||||||||    
T  27193093 aaagagatgcattaaatgaaggataaaaaagtcttttaaacaataactatatcttaaaagttgtgacatttccttataaatag 27193011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 29948033 - 29948143
Alignment:
Q  190 aaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaa 289  Q
    ||||||||| ||||||| | ||| || || |||||  |||||||||||||||||| || |||||||||| | ||||||||||||||   | |||||||||    
T  29948033 aaaaccaatgcaatcattatttaatgtaacttttttgatatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaa 29948132  T
Q  290 aaagataaaca 300  Q
    ||| |||||||    
T  29948133 aaatataaaca 29948143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 292
Target Start/End: Complemental strand, 14418059 - 14417936
Alignment:
Q  171 agaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttg--aatatttttacaaatatacccttataaaaaattgtgaaacatt 268  Q
    ||||||| ||| |||||||||||| |||| | |||| ||||| || | ||||||   |||||| |||||||| |||| | ||||||||||||||| ||||    
T  14418059 agaaaaaacaaaaaacattaaaacaaatatactcattaattagtgtattttttttttaatattcttacaaatttaccttcataaaaaattgtgaagcatt 14417960  T
Q  269 aaatacatctactaatattaaaaa 292  Q
    ||||||| | ||||||||| ||||    
T  14417959 aaatacacccactaatatttaaaa 14417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 35546991 - 35547104
Alignment:
Q  163 ttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtga 262  Q
    |||||||||||| ||  || |||||| ||||| |||| |||| | |||||||  || ||||| ||||||||||| |||||||| ||||| ||| ||||||    
T  35546991 ttattataagaagaagaaaaaaacatcaaaactaataaaatcgttaattattataactttttaaatatttttacgaatataccattatagaaagttgtga 35547090  T
Q  263 aacattaaatacat 276  Q
    ||| || |||||||    
T  35547091 aacttttaatacat 35547104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 36482426 - 36482535
Alignment:
Q  230 tttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaag 329  Q
    |||||||||||||||| |||    || ||||||||||||||||||||  ||||||| || ||| | ||  | | ||| |||||||||||| |||||||||    
T  36482426 tttttacaaatatacctttaatggaagttgtgaaacattaaatacattcactaataatagaaatacaattattaaataaggggtagaaaagtcttttaag 36482525  T
Q  330 caataactat 339  Q
    ||||||||||    
T  36482526 caataactat 36482535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 7736744 - 7736664
Alignment:
Q  158 ggtctttattataagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaa 238  Q
    |||||||||||||| ||||| ||| ||| ||||||| |||||||||||| ||||| || | |||||| |||| ||||||||    
T  7736744 ggtctttattataaaaaaaatcaaaaaatattaaaatcaatacaatcattaattagtgaatttttttaaatacttttacaa 7736664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 3257247 - 3257354
Alignment:
Q  262 aaacattaaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacatttt 361  Q
    |||||||||||| ||| |||||||||||||||| ||||| | ||| || | ||||||| |||||||| |||||  ||  | || |||||||||| |||||    
T  3257247 aaacattaaatatatccactaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatatttt 3257346  T
Q  362 attataaa 369  Q
     |||||||    
T  3257347 cttataaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 14917875 - 14917820
Alignment:
Q  220 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 275  Q
    ||||| || |||||||||||||||||||  ||||||||||||||  ||||||||||    
T  14917875 tttttaaacatttttacaaatataccctcgtaaaaaattgtgaagaattaaataca 14917820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 43442145 - 43442043
Alignment:
Q  269 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    ||||||| | ||||| |||||||||| || || | ||||| || || ||| ||||||||||||||||||||||  |||||| ||| | ||||| ||||||    
T  43442145 aaatacacccactaagattaaaaagaaaatcattaaatgaaggataaaaatatcttttaagcaataactatac-cttaaagatgtaaaattttcttataa 43442047  T
Q  369 atag 372  Q
    ||||    
T  43442046 atag 43442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 378
Target Start/End: Complemental strand, 35931646 - 35931539
Alignment:
Q  269 aaatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataa 368  Q
    ||||||||||| |||||||||||  |||| || | ||||| ||| |||||| || |||||  |||||||| |||||  ||||| ||| ||||| ||||||    
T  35931646 aaatacatctattaatattaaaa--ataatcattaaatgaaggggagaaaagtcatttaaaaaataactacactttagaagttatgaaattttcttataa 35931549  T
Q  369 atagaaccaa 378  Q
    |||| |||||    
T  35931548 ataggaccaa 35931539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 154542 - 154333
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    ||||||||| || |||||| |||||||||||| |||| ||||| || || || ||||||||||||||||| || |||| |||||||| |||||| |||||    
T  154542 aagaaaaacaaaaaaacatcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcatta 154443  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||||| | || ||||||||||||| ||||| | ||| |  |||| |||  |||||||| ||||||||| || || |||||||| | ||||| |||||||    
T  154442 aatacacccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttataaa 154343  T
Q  370 tagaaccaaa 379  Q
    ||||||||||    
T  154342 tagaaccaaa 154333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 170 - 378
Target Start/End: Original strand, 443 - 651
Alignment:
Q  170 aagaaaaaccaagaaacattaaaaccaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacatta 269  Q
    |||||||| ||| |||||| || |||||||| ||||| |||| ||| || ||||| || ||||||||||||||||||||||| ||  |||||||||||||    
T  443 aagaaaaatcaaaaaacatcaataccaataccatcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacatta 542  T
Q  270 aatacatctactaatattaaaaagataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaa 369  Q
    |||  ||| ||||||||||||| || || || | |||||||| || |||| |||||||| ||||||||| || || || |||||||| |||| ||||||     
T  543 aatggatccactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttataat 642  T
Q  370 tagaaccaa 378  Q
    ||| |||||    
T  643 taggaccaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 371
Target Start/End: Original strand, 38802 - 38979
Alignment:
Q  193 accaatacaatcatcaattattgcaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctactaatattaaaaa 292  Q
    ||||| |||||||| | || |||||||||||||||| ||||||||||||||| || ||||||| ||| |||  |||||| | ||| ||||||||| | ||    
T  38802 accaaaacaatcattagttcttgcaattttttgaatgtttttacaaatatactctcataaaaatttgggaactattaaacatatccactaatattgataa 38901  T
Q  293 gataaacacttaatgaggggtagaaaaatcttttaagcaataactatacttttaaagttgtgacattttattataaata 371  Q
     |   ||| | ||| |||| ||||||||| |||||| |||||| ||||  || ||| ||||||| |||| |||||||||    
T  38902 -aacgacattcaataagggctagaaaaatattttaaacaataaatatatcttaaaaattgtgactttttcttataaata 38979  T

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