View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17788_low_4 (Length: 455)
Name: NF17788_low_4
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17788_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 41096373 - 41096819
Alignment:
| Q |
1 |
ttatctgctgacttgtgtggagcaatcaatctaatacatctttgcaggacggggattgaa---ttagtgaatggttgtctagttccaagtacaaactgcc |
97 |
Q |
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| T |
41096373 |
ttatctgctgacttgtgtggagcaagcaatctaatacatctttgcaggacggggattgaacaattagtgaatagttgtctagttccgagtacaaactgcc |
41096472 |
T |
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| Q |
98 |
aaacttgatgttaacagatgataacatgtaagggagccttgaattggaagtagtgttccactatattatcatgatttaactaactcagctcaactagtaa |
197 |
Q |
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| T |
41096473 |
aaacttgatgttaacagatgataacatgtaagggagccttgaattggaagtagtgttccactatattatcatgatataactaactcagctcaactagtaa |
41096572 |
T |
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| Q |
198 |
gaaatctgagacaattgatttgatcaaacattaagaatctaaattaaggaatttatcaataaaaactatcatgaatggctgaaatggtatatgattgcaa |
297 |
Q |
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| T |
41096573 |
gaaatctgagacaattgatttgatcaaacattaagaatctaaattaaggaatttatcaat-aaaactatcatgaatggctgaaatggtatatgattgcaa |
41096671 |
T |
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| Q |
298 |
gtgtgctttattttgtttacttcacaaatcacacttataacaatttatgtgttttgccaaaaatatagtcttgcagcctgcaggagctacattgtaaggt |
397 |
Q |
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| T |
41096672 |
gtgtgctttattttgtttacttcacaaaacacacttataacaatttatgtgttttgccaaaaatatagtcttgcagcctgcaggagctacattgtaaggt |
41096771 |
T |
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| Q |
398 |
gtgaatgtttttccacttttgatgcttccctcaaaggacacaggttct |
445 |
Q |
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| T |
41096772 |
gtgaatgtttttccacttttgatgcttcccttaaaggacagaggttct |
41096819 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 38354626 - 38354685
Alignment:
| Q |
376 |
tgcaggagctacattgtaaggtgtgaatgtttttccacttttgatgcttccctcaaagga |
435 |
Q |
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| T |
38354626 |
tgcaggagctacattgtaagatgtgattgtttttccacttgtgatggtaacctcaaagga |
38354685 |
T |
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