View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17788_low_7 (Length: 335)
Name: NF17788_low_7
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17788_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 85230 - 84903
Alignment:
| Q |
1 |
tgaaatgtttgctagaatccgtgcataaaatcatgttatttctttatagccatctttgccaaattctattagaattataatttaattgccaaatgcaatc |
100 |
Q |
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| T |
85230 |
tgaaatgtttgctagaatccgtgcataaaatcatgttatttctttatagccatctttgccaaattctattagaattataatttaattgccaaatgcaatc |
85131 |
T |
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| Q |
101 |
acaaaatttaacatatcttacaaaagcaagcaacccaatttggcttacctagcagacacatctgtttgttgtcaattctaggttattttatttacacgat |
200 |
Q |
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| T |
85130 |
acaaaatttaacatatcttacaaaagcaagcaacccaatttggcttacctagcagacacatctgtttgttgtcaattctaggttattttatttacacgat |
85031 |
T |
|
| Q |
201 |
tacatcacagttagtgctggattcttgtgctgttttcttttgtatattttnnnnnnnttttctttaatcgaatgaaatcaattgtaatttttatttcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
85030 |
tacatcacagttagtgctggattcttgtgctgttttcttttgtatattttcccccccttttctttaatcgaatgaaatcaattgtaatttttatttcaat |
84931 |
T |
|
| Q |
301 |
aatatatttcccatgcacaggttctgct |
328 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
84930 |
aatatatttcccatgcacaggctctgct |
84903 |
T |
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